Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n18
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     33   0.14 
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518...    28   5.3  
04_03_0087 - 10983528-10984114,10984578-10985160                       27   9.3  

>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 154 NVPQGSGYLVCVRNFHFYSKVL--YVPNEINN*LNFSI 47
           ++PQ  GYLV ++N   Y  VL  ++PN I N    SI
Sbjct: 249 HIPQELGYLVDLKNLSLYDNVLTGFIPNNIGNFTKLSI 286


>05_04_0275 -
           19650555-19650625,19650927-19651221,19651593-19651895,
           19651978-19652182,19652266-19652501,19652619-19652816,
           19653785-19653907,19654227-19654514,19654618-19654794,
           19655580-19655915,19656753-19656863,19656977-19657227,
           19657431-19657566
          Length = 909

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 169 FYRHCNVPQGSGYLVCVRNFHFYSKVLYVPNEIN 68
           F    N+P+ +G       F FY +VLY P+  N
Sbjct: 472 FLETLNLPENTGLFNITAQFPFYREVLYSPDFTN 505


>04_03_0087 - 10983528-10984114,10984578-10985160
          Length = 389

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 LHRPACVTTSHREPVLTAPLVTESRRPAAECGPTRRRR 346
           +  P  +  + R P   +P+  + +RP A+CG  R RR
Sbjct: 186 IDNPYSIEDADRSPP-RSPMTKKRKRPIAKCGQGRTRR 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,960,381
Number of Sequences: 37544
Number of extensions: 296025
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)