Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n18
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.1  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    24   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 426 VTSWLLLYIQLCVCSNGVRSGV 491
           +T WLLL + L +    +R GV
Sbjct: 1   MTKWLLLMVCLGIACQNIRGGV 22


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 426 VTSWLLLYIQLCVCSNGVRSGV 491
           +T WLLL + L +    +R GV
Sbjct: 1   MTKWLLLMVCLGIACQNIRGGV 22


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/56 (19%), Positives = 25/56 (44%)
 Frame = -1

Query: 238 VQGLLEMHGSNYVLVTSIFIVNIFYRHCNVPQGSGYLVCVRNFHFYSKVLYVPNEI 71
           V   +EM+  +   + S+      +RH +V  G    +C+   +    ++++P  I
Sbjct: 366 VSARIEMNEDDNTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNI 421


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 456 LCVCSNGVRSGVG 494
           LC  SNG+ SG+G
Sbjct: 785 LCQASNGIGSGIG 797


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 456 LCVCSNGVRSGVG 494
           LC  SNG+ SG+G
Sbjct: 781 LCQASNGIGSGIG 793


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 426 VTSWLLLYIQLCVCSNGVRS 485
           +T+WLLL + L +   G+ S
Sbjct: 1   MTTWLLLVVCLGIACQGITS 20


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 426 VTSWLLLYIQLCVCSNGVRSGV 491
           +T+WLLL + L +    V S +
Sbjct: 1   MTNWLLLIVCLSIACQDVTSAI 22


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 211 SHAFQEAPAPPGVCY 255
           SH       PPGVCY
Sbjct: 358 SHPLHGNLLPPGVCY 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,320
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)