Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n17
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    41   2e-04
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.2  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   3.6  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    26   3.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   6.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 1/161 (0%)
 Frame = +3

Query: 111 LQRYLGNFLEQKLTLDQLSVDLYNGTGTVCDVSLDCQALNELGDSQNWPLQIVDGYMQEI 290
           L R LG ++E      QL V ++NG  T+ ++ L   A  +L      P+ +  G ++E+
Sbjct: 10  LNRLLGEYIEN-FDATQLKVAVWNGDVTLRNLQLKRSAFRKL----ELPISVQYGLVEEL 64

Query: 291 TVTIPWSTLLKDDSIVEVNGLSVTVQPKVRAEPAXXXXXXXXXXXXXXXQLAAECLRDED 470
           T+ IPWS+L      + + G+      +   +                     E    + 
Sbjct: 65  TLKIPWSSLKNKPVEIYIVGIRALASMEENVKSQSEVDPHQVLESKRRQMQLWEA--SQI 122

Query: 471 GPQETHAVEGIEMFAHA-IDSILSRVKVKFINTKIRIEHVP 590
           G  ET      + F  + I  ++  +++   +  IR EH+P
Sbjct: 123 GKAETAYDPKTQTFTESLITRMIDNIQINIRDIHIRFEHLP 163


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 590 GYMLYPYFCIYEFHFHPAQN*INSVCKHFN 501
           G  LY +FCIY+  F      I  + K+FN
Sbjct: 343 GLYLYLFFCIYKIKFQKCDMNIVMLTKYFN 372


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
 Frame = -3

Query: 406 SNIDDAGSARTLG*TVTERPLTSTIESSFSRVDHGIVTVISCI*PSTICNGQFCESPNSL 227
           S +  + SA   G   +  P+ S+ + S     HGI +  S   P    N +   SP+ L
Sbjct: 210 SEVPSSASAYQAG--YSSYPVRSSPQLSHEDTRHGIASSGSTRYPFVPANTRASHSPSLL 267

Query: 226 RA*QSRLTSHTVPVPLY--KST--LS*SKVSFCSRK-LPK*RCKRYLQALFLMLSDH 71
                 L S   PV  Y  KS+  LS S     SRK  PK R        F   S+H
Sbjct: 268 EPYAHSLPSSVAPVGAYPEKSSYLLSNSSNDSASRKEKPKARASTPPPLNFSRASEH 324


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 282 AYNHQLFVMASFVSPLI 232
           AY H LF+M SF+ PL+
Sbjct: 130 AYFHHLFIMDSFMLPLV 146


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 472 PSSSRRHSAASCMDDDIEDHIDSNIDD 392
           P     H+AA   DD+ +D ID+ I++
Sbjct: 22  PPQQPAHAAAPAQDDEPDDDIDALIEE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,444
Number of Sequences: 5004
Number of extensions: 43159
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)