Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17n17
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 54 1e-07
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 50 1e-06
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 28 4.9
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 28 6.5
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 28 6.5
05_07_0013 + 27044145-27044339,27044461-27045558 28 6.5
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 28 6.5
04_03_0990 - 21481459-21481933,21482140-21482771 27 8.6
04_03_0607 + 17954029-17954152,17954317-17954543 27 8.6
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/89 (32%), Positives = 51/89 (57%)
Frame = +3
Query: 105 YLLQRYLGNFLEQKLTLDQLSVDLYNGTGTVCDVSLDCQALNELGDSQNWPLQIVDGYMQ 284
YLL++YLG ++E L+++ L + ++ G + D+ L ALN L P+ + G++
Sbjct: 98 YLLRKYLGEYVE-GLSVETLRISVWQGDVVLKDLKLKADALNSL----RLPVTVKAGFVG 152
Query: 285 EITVTIPWSTLLKDDSIVEVNGLSVTVQP 371
IT+ +PW +L K+ IV ++ L V P
Sbjct: 153 TITLKVPWKSLGKEPVIVLIDRLFVLAHP 181
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 50.0 bits (114), Expect = 1e-06
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Frame = +3
Query: 90 KRACRYLLQRYLGNFLEQKLTLDQLSVDLYNGTGTVCDVSLDCQALN-ELGDSQNWPLQI 266
KR C+ LL++ LG+ + L LDQ + L GT + D++L+ +N +L S + +
Sbjct: 3 KRLCKSLLKKRLGDLILGDLDLDQFDLQLTRGTLHLSDIALNADFVNRKLSGS---AIMM 59
Query: 267 VDGYMQEITVTIPWSTLLKDDSIVEVNGLSVTVQPKVRAE-PAXXXXXXXXXXXXXXXQL 443
+G ++ + V IP ++D + V L + + V +E P+ Q
Sbjct: 60 KEGSIKSLLVRIPLLLNMRDCCEIVVEDLELVLAASVSSEDPSGDTECSVSGSNTDDTQK 119
Query: 444 AAECLRDE-DGPQ-ETHAV----EGIEMFAHAIDSILSRVKVKFINTKI 572
+ + R+E DG Q T A +G++ A+A+ L+ +K N+ +
Sbjct: 120 SVQAKRNESDGNQCSTSASRDVDKGVQRIANAVTCFLTNFNIKLKNSYV 168
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 460 RRHSAASCMDDDIEDHIDSNIDDAGSARTLG*TVTERPLTSTIESSFS 317
+ H A SC +D D + +I+ SAR G T T+R L + +S S
Sbjct: 120 QEHGARSCSVEDDLDRLIRSINVRTSARASGQTSTDRRLIALGKSPIS 167
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 472 PSSSRRHSAASCMDDDIEDHID 407
PSSSR +A S +DDD +D +D
Sbjct: 84 PSSSRLDAAESDLDDDDDDDVD 105
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 457 RHSAASCMDDDIEDHIDSNIDDAGSARTLG*TVTER 350
R S ++D++ED + +N D A S+R L VT+R
Sbjct: 275 RIRGVSDVEDELEDIVAANSDKANSSRGLQMIVTQR 310
>05_07_0013 + 27044145-27044339,27044461-27045558
Length = 430
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 397 DDAGSARTLG*TVTERPLTSTIESSFSRVDHGIVTVISC 281
DD+ A T+ + ERP T+ +S S + +G V V C
Sbjct: 159 DDSSRAPTVMTSTEERPATAACVASRSLIPNGAVPVFPC 197
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 174 LYNGTGTVCDVSLDCQA--LNEL-GDSQNWPLQIVDGYMQEITVTIPWSTLLKDDSIVEV 344
+++G+ V DVS + L E+ S +WPLQ+++ T P +T K ++V +
Sbjct: 480 IFSGSIVVLDVSFNRLGGELQEVDSSSSDWPLQVLNISSNLFTGAFPSTTWEKMSNLVAI 539
Query: 345 N 347
N
Sbjct: 540 N 540
>04_03_0990 - 21481459-21481933,21482140-21482771
Length = 368
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 441 LAAECLRDEDGPQETHAV---EGIEMFAHAIDSILSRVKVKFINTKI 572
L +CLR D P + + EG+E + + SIL V KF+ T +
Sbjct: 320 LKEKCLRFLDDPVKLRLIVQAEGVENLSKSYPSILKDVIAKFVATPV 366
>04_03_0607 + 17954029-17954152,17954317-17954543
Length = 116
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 475 GPSSSRRHSAASCMDDDIEDHIDSNIDDA 389
G ++S RH+ AS DD H++SN DA
Sbjct: 15 GNTNSSRHAFASVSLDDDFKHMESNTQDA 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,912
Number of Sequences: 37544
Number of extensions: 264803
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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