Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17n17
(597 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 27 0.18
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 27 0.18
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.98
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 0.98
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 1.7
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 4.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.3
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 21 6.9
AY526235-1|AAS20468.1| 169|Apis mellifera esterase protein. 21 6.9
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 21 6.9
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 9.2
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 9.2
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 9.2
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 26.6 bits (56), Expect = 0.18
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 63 YLPWSESIKKRACRYLLQRYLGNFLEQKLTLDQLSVDL 176
Y +++R Y RY G F +++L L +LS L
Sbjct: 401 YRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKL 438
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 26.6 bits (56), Expect = 0.18
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 63 YLPWSESIKKRACRYLLQRYLGNFLEQKLTLDQLSVDL 176
Y +++R Y RY G F +++L L +LS L
Sbjct: 369 YRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKL 406
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.98
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 486 VFLEGHLRHGGTLQLAAWTMTLKTTLIPTLMMLAQP 379
V L H R T ++A W + ++P L+++ +P
Sbjct: 327 VVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 0.98
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 486 VFLEGHLRHGGTLQLAAWTMTLKTTLIPTLMMLAQP 379
V L H R T ++A W + ++P L+++ +P
Sbjct: 327 VVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 486 VFLEGHLRHGGTLQLAAWTMTLKTTLIPTLMMLAQP 379
V L H R T ++A W + +P L+++ P
Sbjct: 318 VILNVHYRKPSTHKMAPWVRKIFIRRLPKLLLMRVP 353
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 358 SQFNPKCGLSQHHQCWN 408
SQ++P G S HHQ N
Sbjct: 324 SQYHPHRGSSPHHQHGN 340
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 516 VQTFQFLQQHVFLEGHLRHGGTLQLAAWTMTLKTTLIPTLMML 388
+ TF V L H R T +A W + ++P L+++
Sbjct: 313 LDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVM 355
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 296 DSDLLHITINY 264
DSD++ +TINY
Sbjct: 148 DSDVIFVTINY 158
>AY526235-1|AAS20468.1| 169|Apis mellifera esterase protein.
Length = 169
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 296 DSDLLHITINY 264
DSD++ +TINY
Sbjct: 19 DSDVIFVTINY 29
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 21.4 bits (43), Expect = 6.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 296 DSDLLHITINY 264
DSD++ +TINY
Sbjct: 148 DSDVIFVTINY 158
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 111 LQRYLGNFLEQ 143
LQR++GNFL Q
Sbjct: 209 LQRHMGNFLIQ 219
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 120 YLGNFLEQKLTLDQLSVDLYNGTGTVCDVSL 212
Y G F+ TLD + D+ T V S+
Sbjct: 165 YGGGFMSGTATLDVYNADIMAATSNVIIASM 195
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 120 YLGNFLEQKLTLDQLSVDLYNGTGTVCDVSL 212
Y G F+ TLD + D+ T V S+
Sbjct: 165 YGGGFMSGTATLDVYNADIMAATSNVIIASM 195
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,542
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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