Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17n16
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 36 3e-05
03_03_0009 - 13691820-13691900,13693576-13693719 44 8e-05
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 44 1e-04
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 31 0.57
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 30 1.3
01_06_1326 - 36318942-36319037,36319126-36319135,36319298-363193... 30 1.7
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 2.3
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 28 5.3
07_03_1788 + 29523216-29524867,29525048-29525075 28 7.0
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 28 7.0
01_07_0246 + 42253379-42253642,42253846-42254084,42254267-422544... 28 7.0
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 27 9.2
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721... 27 9.2
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 35.9 bits (79), Expect(2) = 3e-05
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 113 EYKSGDFIFAKVKGYPAWPA 172
++K GD + AK+KG+PAWPA
Sbjct: 22 QWKVGDLVLAKMKGFPAWPA 41
Score = 29.1 bits (62), Expect(2) = 3e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 194 KKYFVYFYGTGEIANLPPNMIFDYAENKDKFL--TKTVKRRDFNDGVKQI 337
KK VYFYGT +IA + + E K K L + K DF VK+I
Sbjct: 81 KKLLVYFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEI 130
>03_03_0009 - 13691820-13691900,13693576-13693719
Length = 74
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Frame = +2
Query: 113 EYKSGDFIFAKVKGYPAWPARV-------QRLNGKKYFVYFYGTGEI 232
++K GD + AK+KG+PAWPA + Q KK VYFYGT ++
Sbjct: 28 QWKVGDLVLAKMKGFPAWPAMISEPEQWGQTSVKKKILVYFYGTKQM 74
>08_01_0003 +
30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +2
Query: 92 KMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNG-------KKYFVYFYGTGEI 232
K K + + GD + AKVKGYP WPA+V + +K FV F+GT EI
Sbjct: 10 KAHKWTTQPQLGDLVLAKVKGYPPWPAKVSKPEDWDQMPVPRKVFVVFFGTREI 63
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 506 NTLNNDTAVEDSDDTGALVIDEGKPKGRKSKAE 604
N +N+T E D GALV EGK K R S+AE
Sbjct: 754 NMTSNNTVEETPKDLGALVPLEGKVKKRGSRAE 786
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +2
Query: 65 HGGSGIVILKMGKKVREYKSGDFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLP 244
+GG+ L + K R + +++FA + GY PA VQ G Y YF G G IA
Sbjct: 551 NGGAYPPDLSLITKAR-HNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPG-GAIA--M 606
Query: 245 PNMIFDYA 268
P M+ D A
Sbjct: 607 PKMLIDGA 614
>01_06_1326 -
36318942-36319037,36319126-36319135,36319298-36319368,
36319594-36319679,36320217-36320295,36320401-36320493,
36320656-36320678,36320829-36320956,36321182-36321278,
36321394-36321646,36321744-36321887,36335560-36335811
Length = 443
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 265 IIEYHVWW*I-CNFTSAIEIYKIF-LSIQSLYPSWP 164
++ WW I CN T AIE + I S+QS+ PS P
Sbjct: 343 LVPAEAWWYIACNTTDAIEPHTIIGSSLQSMTPSTP 378
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 71 GSGIVILKMGKKV--REYKSGDFIFAKVKGYPAWPARV 178
GSG ++ G R + GD ++ KVK +P WP V
Sbjct: 27 GSGAIVHPGGGGAWPRGVRFGDMVWGKVKSHPWWPGHV 64
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 168 GHAGYPLTLANIKSPDLYSLTFLPIFSITMPLPPCSMLS-LHNTYSRQR 25
GH+ + T++ SPD+ S+ F+PI S+ + C L+ N Y R +
Sbjct: 328 GHSNWLSTISG--SPDVISMAFVPITSLLTGVRGCGFLNHAVNLYLRYK 374
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 116 YKSGDFIFAKVKGYPAWPARV--QRLNGKKYFVYFYGTGEIA 235
+ GD ++ K +PAWP V G + V F+G +A
Sbjct: 61 FAPGDLVWGKKLSHPAWPGEVISAAPTGAQLLVSFFGDKALA 102
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 113 EYKSGDFIFAKVKGYPAWPARV 178
E++ D ++ KVK +P WP +
Sbjct: 247 EFRVSDLVWGKVKSHPWWPGEI 268
>01_07_0246 +
42253379-42253642,42253846-42254084,42254267-42254471,
42254719-42254787,42254869-42255055,42255760-42255926,
42256350-42257045
Length = 608
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 126 PDLYSLTFLPIFSITMPLPPCSMLS-LHNTYSRQR 25
PD+ S++F+PI S+ +P C L+ N Y R +
Sbjct: 289 PDVISMSFIPITSLLNGVPGCGFLNHAINLYLRYK 323
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 126 PDLYSLTFLPIFSITMPLPPCSMLS 52
PD+ S++F+PI S+ +P C L+
Sbjct: 288 PDVISMSFIPITSLLNGVPGCGFLN 312
>06_01_0934 -
7212408-7212794,7212887-7213416,7214192-7214302,
7214322-7214811
Length = 505
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 165 HAGY-PLTLANIKSPDLYSLTFLPIFSITMPLPPCS 61
H G PL +A KS YSL++L SITM L C+
Sbjct: 356 HGGSTPLDVAFNKSTRYYSLSWLSSTSITMCLQACN 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,658,196
Number of Sequences: 37544
Number of extensions: 264367
Number of successful extensions: 684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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