Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17n15
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 31 0.20
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.4
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 5.6
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 26 5.6
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 26 5.6
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 26 5.6
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 7.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.4
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 7.4
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 7.4
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 324 LRPNLTSCTQHVT-C-FQRL*FIRGIGTRWYTF 232
L PN SC H+T C F L ++GI ++WY +
Sbjct: 69 LNPNFESCNPHITLCTFLALESLKGIQSKWYGY 101
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 340 SLSTTAVPVHADSFRLKILLTPSRTVQEYLQESFELFREDVKRLEQSAFGFEERRS 507
S TA S RL + PSR+VQE + E +D + L++ A +EE RS
Sbjct: 209 SAINTATRSKLPSMRLTTVQVPSRSVQEIIIE------KDPELLKRQAEKYEEERS 258
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 382 RLKILLTPSRTVQEYLQESF 441
RL I+ TPS T+ E +QES+
Sbjct: 572 RLNIIKTPSFTLDEKIQESY 591
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 364 VHADSFRLKILLTPSRTVQEYLQESFELFREDVKRLEQSA 483
+HA LK+L T + E+FEL E+ K+ ++A
Sbjct: 129 LHAKESELKLLKTQLSNLNHCNPETFELKNENTKKYMEAA 168
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 134 LDTSIIPQNIPSWKHYL 84
LD SI+P+N+ W+ Y+
Sbjct: 119 LDASILPKNLQQWRVYI 135
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 134 LDTSIIPQNIPSWKHYL 84
LD SI+P+N+ W+ Y+
Sbjct: 119 LDASILPKNLQQWRVYI 135
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 651 CTTERRCRYIYEHQTVIGIRANYKFVV 571
CT+E++ R YE QTV I KF++
Sbjct: 421 CTSEKKTRQSYEQQTV-KIEEQLKFLL 446
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 263 FVGSGRDGTHFSLIHSQVHKGFLLLKLQLENV 168
+ G+D ++S+ H Q + LLL+ ENV
Sbjct: 2299 YTNGGKDYLNYSVFHLQKYNDPLLLRSSWENV 2330
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 10 VAILYIGTAQQYNLYHNVY 66
+ I+Y GT Q +N YH+ +
Sbjct: 352 IPIIYYGTEQNFNSYHDPF 370
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 158 KFLSHFPIVVSGAKIL--YGLGNVLMKNVYHLVPI---PRINYNLWKHVTCCVQEVKFGL 322
K++SH P+ +S + +G+++ V L P+ P I+ + V C ++VK L
Sbjct: 517 KYVSH-PVSLSSNSFHTEFPIGSLMRFTVMDLNPVTCTPEISEKTGRVVDCSEEKVKIQL 575
Query: 323 NQGER 337
+ G+R
Sbjct: 576 DLGDR 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,065
Number of Sequences: 5004
Number of extensions: 69532
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -