Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n14
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    54   2e-08
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    38   0.001
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   3.8  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   5.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   8.8  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 34/95 (35%), Positives = 47/95 (49%)
 Frame = +2

Query: 314 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 493
           K +ID D G DDA+   LA    +     +L+GVTT  GN      + N  ++L +A R 
Sbjct: 2   KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57

Query: 494 DVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYP 598
           D+P+Y GS   L++ P IT        G  G V P
Sbjct: 58  DIPVYAGSNKPLLRAP-ITATHVHGASGFEGAVLP 91


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 323 IDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVP 502
           ID D G DD +A+ LAA     H   +++GV+T +GNT  +  + N   ++++   QDV 
Sbjct: 21  IDCDPGHDDVVALTLAAC--AGHC--KILGVSTVHGNTTLEFTTKNALAVMELL-NQDVD 75

Query: 503 IYRGSKSSLVKTPEI-TDYFGKDGL 574
           ++ G+   L++     T   G +GL
Sbjct: 76  VHAGAAKPLMRESAFATHIHGTNGL 100


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 455 YNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLV 607
           +N Q  LKV    D P+Y  +++ ++    +  Y   + L +   V  DL+
Sbjct: 468 HNQQASLKVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLL 518


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 502 WHVLSFGDLQYSLVIVRNVVFVGV 431
           W V+ FG + Y+ ++  N + +G+
Sbjct: 364 WIVICFGIVAYASIVAANAILIGI 387


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 542 EITDYFGKDGLGDSGDVYPDLVPP 613
           E+ ++F  DGL D G   P + PP
Sbjct: 61  EMREFFNFDGLPDQGLNLPSIAPP 84


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 413 VTTSNGNTNEDNVSYNNQ 466
           V  SNGN N DN + N+Q
Sbjct: 773 VVESNGNANGDNTATNSQ 790


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 437 NEDNVSYNNQRILKVAKRQDV 499
           N+D   Y+ Q++L V +++DV
Sbjct: 87  NDDGEEYSGQKLLNVLRKEDV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,731
Number of Sequences: 5004
Number of extensions: 46692
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)