Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n14
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167...    40   0.002
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524...    36   0.034
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180...    29   3.9  
12_01_0408 - 3226191-3228005                                           28   5.2  
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414...    28   6.8  
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807...    28   6.8  
03_04_0220 - 18741485-18741915,18742007-18742190                       28   6.8  

>08_02_1567 -
           27916010-27916118,27916256-27916391,27916675-27916771,
           27916866-27916970,27917058-27917240,27917764-27917823,
           27917909-27918096,27919234-27919294
          Length = 312

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +2

Query: 344 DDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKS 523
           DD+M I +A          ++IG+TT  GNT   N + N   + + A   +VP+  GS  
Sbjct: 45  DDSMTILMAFRAPTV----EIIGLTTIFGNTTTKNATQNALLLCERAGHPEVPVAEGSAE 100

Query: 524 SLV-KTPEITDY-FGKDGLGD 580
            L    P + D+  G DGLG+
Sbjct: 101 PLKGGEPRVADFVHGSDGLGN 121


>03_04_0131 -
           17551438-17551549,17552080-17552215,17552361-17552468,
           17552803-17552899,17553003-17553107,17553207-17553392,
           17553679-17553738,17553883-17553990
          Length = 303

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 353 MAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLV 532
           MAIF+A    +     +L+G+TT  GN      + N   +L+   R D+P+  GS  ++ 
Sbjct: 1   MAIFVALRSPEV----ELLGLTTIFGNVYTTLATRNALHLLEAVGRTDIPVAEGSHVTIK 56

Query: 533 KTPEI---TDYFGKDGLGD 580
           K  ++   +   G DGLG+
Sbjct: 57  KATKLRIASFVHGSDGLGN 75


>06_02_0101 -
           11816507-11816878,11817571-11817840,11818014-11818076,
           11818610-11819002
          Length = 365

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +2

Query: 410 GVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGD 589
           GV  S+ + ++D+ S N   +   A+  D  I   S  +++K P ITD+FG+  + +   
Sbjct: 281 GVFESSWDPHDDSKS-NGDAVADCARSAD-SIANCSIRAVIK-PLITDHFGESIVDELFQ 337

Query: 590 VYPDLVPPH 616
           VY  LV  H
Sbjct: 338 VYVPLVAKH 346


>12_01_0408 - 3226191-3228005
          Length = 604

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 487 FGDLQYSLVIVRNVVFVGVTVACRNSN*LRTGMILLEQSGQEYG 356
           F D+    V   +V  +GV  AC +S  + TG+ LL     EYG
Sbjct: 307 FSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYG 350


>04_04_1016 -
           30139691-30139951,30140066-30140134,30141267-30141470,
           30141552-30141808,30141899-30141983,30142080-30142164,
           30142269-30142795
          Length = 495

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 341 GDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSK 520
           GD A  I L        AG +  GVT  +   N+ ++ Y   + +K  +    PIY  + 
Sbjct: 94  GDAATVICLDDYHSLDRAGRKERGVTALDPRANDFDLMYRQLKAIKEGRAVAKPIYNHA- 152

Query: 521 SSLVKTPEI 547
           + L+  PE+
Sbjct: 153 TGLLDPPEL 161


>04_04_1009 -
           30078988-30079248,30079363-30079431,30080564-30080767,
           30080849-30081105,30081196-30081280,30081377-30081461,
           30081566-30082092
          Length = 495

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 341 GDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSK 520
           GD A  I L        AG +  GVT  +   N+ ++ Y   + +K  +    PIY  + 
Sbjct: 94  GDAATVICLDDYHSLDRAGRKERGVTALDPRANDFDLMYRQLKAIKEGRAVAKPIYNHA- 152

Query: 521 SSLVKTPEI 547
           + L+  PE+
Sbjct: 153 TGLLDPPEL 161


>03_04_0220 - 18741485-18741915,18742007-18742190
          Length = 204

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 303 ELRGNS*STMTLAVMMLWPYSWPLCSRSIMPVL 401
           E  G + + +  AV +LW  +WPLC  ++  VL
Sbjct: 70  EAAGRTINPVHGAVGLLWTGNWPLCQAAVETVL 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,493
Number of Sequences: 37544
Number of extensions: 277243
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)