Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n14
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.3  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 509 RGSKSSLVKTPEI 547
           +GSK S++ TPEI
Sbjct: 280 KGSKCSMITTPEI 292


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 425 NGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 517
           N N N   + YN   I ++     VPIY G+
Sbjct: 315 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 425 NGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 517
           N N N   + YN   I ++     VPIY G+
Sbjct: 326 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 413 VTTSNGNTNEDNVSYNN 463
           +T  N NTN  N + NN
Sbjct: 228 ITAGNANTNASNNNNNN 244


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 422 SNGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 517
           +N N N   + YN   I ++     VPIY G+
Sbjct: 342 NNYNNNYKKLYYNINYIEQIPVPVPVPIYCGN 373


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 269 RMGTTLFKSMTGIKRKFVIDNDAG----GDDAMAIFLAALFEKY 388
           RMG ++  + TGI ++ + D + G     D+ + +++    +K+
Sbjct: 27  RMGQSICMAKTGINKQIINDVNDGKINIEDENVQLYIECAMKKF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,321
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)