Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n13
         (151 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   1.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   1.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   3.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          19   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   5.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    19   7.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    19   7.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    18   9.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    18   9.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    18   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 11  LASTYTAVTLKLCNAMDDFYSEFKN 85
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 11  LASTYTAVTLKLCNAMDDFYSEFKN 85
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 84  FLNSL*KSSIALH 46
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 114 FYKTSVCF*PFLNSL*KSSIALHNLSVTAVYV 19
           +Y  S+C   F ++L   ++ LH+  V    V
Sbjct: 278 YYGVSICLVTFASALAVVTLNLHHRGVRGTRV 309


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 39  SNYVTQW-TISIVNLKMVRNTHLFCKMYS 122
           +N +T+  T+  VN++   N    CK Y+
Sbjct: 183 TNEITEHRTVLAVNIEKSENETKTCKKYA 211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 21  HIQLLHSNYVTQWTISIVNLKMVRNTHL 104
           H Q L  +   +W +   ++ + RN H+
Sbjct: 696 HTQRLVVHVPPRWIVEPTDVSVERNKHV 723


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 117 YSKLVANNQKK 149
           Y KL  NN KK
Sbjct: 96  YKKLYCNNYKK 106


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 117 YSKLVANNQKK 149
           Y KL  NN KK
Sbjct: 96  YKKLYCNNYKK 106


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 42  NYVTQWTISIVNLKMVRNT 98
           NY   WTI  +  +++  T
Sbjct: 517 NYSVNWTIGQLEAEVINCT 535


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 124 LLYILQNKCVFLTIFKFTIEIVH 56
           +  I Q K   L I+K+  +I+H
Sbjct: 80  MFLISQQKTSKLKIYKWNNQILH 102


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 124 LLYILQNKCVFLTIFKFTIEIVH 56
           +  I Q K   L I+K+  +I+H
Sbjct: 63  MFLISQQKTSKLKIYKWNNQILH 85


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +3

Query: 36  HSNYVTQWTISIVNLKMVRNTHL 104
           H+N    + + + N+K  R+  L
Sbjct: 669 HANQRNMYKLDLKNMKYTRSADL 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,660
Number of Sequences: 438
Number of extensions: 641
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)