Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n12
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   7.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 465 DVGKAVLVFNRLPDVQRS 412
           ++GKA+LV ++LP VQ S
Sbjct: 302 EIGKAILVRSKLPTVQLS 319


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 176 QYARD-CVINYVSALSTLRKCFFCWYWYRNFCASRGRQTESLNFIKHFQFVLHATI 12
           QY+ + C   ++   +++ KC  C  W   FC  RG+   S + I H     H  +
Sbjct: 38  QYSEEHCAYCHIKNPNSILKCLHCNKW---FCNVRGKSGAS-HIISHLVRARHKQV 89


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 191 YNFLNQYARDCVINYVSALSTLRKCFFCWY 102
           Y F++ Y   C IN  S L      F+ WY
Sbjct: 458 YTFVDPYTYACYINNNSYLPPSYMDFYTWY 487


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -1

Query: 263 NLH*TPMTSIIVFK*ITLRLSVSNYNFLNQYARDCVINYVSAL 135
           NL+     + +  + +TL  S ++ +   QYA+ CV++++S +
Sbjct: 65  NLYRNSSVNELKIEALTLIQSCAHRDEFKQYAQSCVLSFISLI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,757
Number of Sequences: 5004
Number of extensions: 40199
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)