Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n11
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   3.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   4.6  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   4.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.0  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 438 KDFDSKLCSYWNLKKTCKP 494
           KDFD+  C  W +  +C+P
Sbjct: 65  KDFDAFDCKLWTMSPSCQP 83


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 160 FQNLRRKSILEYILSFMFLLLYLFDTIVKTSQITKIN*FRKMGHTNTVLV 11
           F  L R   L+Y+  F +L+LY F   +   Q+T +  F  +  T   LV
Sbjct: 330 FNRLFRIWWLKYLGPFSYLILYYFFLDISKLQMTSLTFFLLISTTILTLV 379


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -3

Query: 528 SHPNWKHSANSWAYRFFLNSNSYIVYYRSLLVPNCEPISLKRFFF 394
           ++  W + A  W+ R       Y V+  S +  NC  I + ++ +
Sbjct: 203 TYAEWANVAYDWSQRIGFIQEDYTVFDGSSIKDNCSSIEITQWTY 247


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/69 (21%), Positives = 27/69 (39%)
 Frame = +3

Query: 306 LYSNQITLESHTWSSIFNVKNIYYGYTKTKRRIVLKKLAHSSELKDFDSKLCSYWNLKKT 485
           L+ N++     TW    +    YY    T   +  K       L++ +    + W  K+ 
Sbjct: 774 LWKNKVLGTDLTWMKTVSEIFEYYAERTTGAYVENKDATVILHLREAEDDEAAMWAAKEC 833

Query: 486 CKPMNLLNV 512
           C+ +N  NV
Sbjct: 834 CESVNNFNV 842


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +3

Query: 375 YGYTKTKRRIVLKKLAHSSELKDFDSKLCSYWNLKKTCKPMNLLNVSNLDEKIINLVEYN 554
           YGY     RI L  +     L+D  +K C   NLK    P N  ++SNLDE  +N +E +
Sbjct: 343 YGYVSG--RIALSPIHLRGALRDVTNK-C---NLKV---PRNRNSLSNLDEYYVNGLESD 393

Query: 555 LT 560
            T
Sbjct: 394 ET 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,874
Number of Sequences: 5004
Number of extensions: 40074
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)