Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n01
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   0.94 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   1.2  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    27   1.2  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    26   2.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   5.0  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 32  KRYFLYFENIYRMGFFFSIVKTSI-IFGAGVYTGV 133
           K  FL F+N+  + F F ++  SI IFG  V  G+
Sbjct: 103 KNIFLQFQNVANLFFLFLVILQSISIFGEQVNPGL 137


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 2   NNTKNVLNNTKRYFLYFENIYRMGFFFSIVKTSIIFG 112
           N T+ +L   K+Y   F N+Y    F SIV+  +  G
Sbjct: 370 NMTEMILPLVKQYDHKFRNLYSPNIFLSIVQALVFCG 406


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 202 GYGKKEMIEKVEDPKALFEKAQAFVKSKLSEVQ 300
           GYG+K M++ +E  K  F  ++ FV S     Q
Sbjct: 89  GYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQ 121


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -3

Query: 433 FFFSXNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 311
           FF+S   +Y T ++  I+N+   ++ +   N      N +L
Sbjct: 100 FFYSSTLLYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHL 140


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
 Frame = +2

Query: 2   NNTKNVLNNTKRYFLYFENI----------YRMGFFFSIVKTSIIFGAG-VYTGVYVAQN 148
           NN  N+L N  +YF++ +NI            +  + SI+  +I    G +  G+ + Q+
Sbjct: 123 NNILNMLVNLMKYFVHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETGDLKKGIAIFQD 182

Query: 149 YQDAVQVICQKSVQNC 196
             DA Q +  + + NC
Sbjct: 183 LSDAEQAV--QYLSNC 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,790
Number of Sequences: 5004
Number of extensions: 22466
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)