Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m24
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 31 0.92
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 30 1.6
04_03_0553 + 17070833-17071244,17072370-17072453,17072734-170727... 29 3.7
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 28 4.9
01_05_0737 - 24780952-24781100,24781515-24783453 28 4.9
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 28 4.9
07_03_1018 + 23326465-23326493,23326679-23327465 27 8.6
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 27 8.6
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 382 SNAYVLHDAYNSYGMTTETVIPHHQDVFPRSY---QYDLDCIKYRRDHACDGLKQKHSNK 552
+N + HD +N T+ D + + +L+ + DHAC G + H +
Sbjct: 802 TNKHACHDGHNHCADTSNLHDTKKHDCHGHEHSTCKEELNALPPTNDHACHGHEHSHCEE 861
Query: 553 PIRAHA 570
P+ H+
Sbjct: 862 PVALHS 867
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 418 YGMTTET--VIPHHQDVFPRSYQYDLDCIKYRRDH 516
+G TE ++PHH D SY D + IK+ DH
Sbjct: 228 FGHATEDDFILPHHSDKIYESYVGDKNIIKFDGDH 262
>04_03_0553 +
17070833-17071244,17072370-17072453,17072734-17072759,
17073514-17073660
Length = 222
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 223 PPCLTQRTIGKFLQPLTRELAEIPPKPTIDELPGPVIER 339
PPCL L LTR+ A ++DELPG ER
Sbjct: 88 PPCLQSGGSSGGLLVLTRDEAPAVKASSVDELPGGGTER 126
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 TTNHPTDPRSNISKLGSYDPE-KYVLDNVSSTVLTDESLTPGRPP 228
+ N P P SN+ +G Y E + V V ST T+ S P PP
Sbjct: 245 SANSPGGPTSNMFAVGPYANEPQLVSPPVFSTYTTEPSTAPLTPP 289
>01_05_0737 - 24780952-24781100,24781515-24783453
Length = 695
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 221 RPGVKLSSVNTVDETLSKTYFSGSYEP-NLEILLLGSVG*FVVSIFTKYCR*FERKKSYF 45
R G +L V+ + E+ + +F G + E+ LL SV V+ YC E KK YF
Sbjct: 239 RLGGRLKEVHWMGESFAMKHFIGDTDAAGAEVALLCSVAHPNVA-HAAYCFHDEEKKEYF 297
Query: 44 *IISWLVA 21
++ L+A
Sbjct: 298 VVMDQLMA 305
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 TTNHPTDPRSNISKLGSYDPE-KYVLDNVSSTVLTDESLTPGRPP 228
+ N P P SN+ +G Y E + V V ST T+ S P PP
Sbjct: 1021 SANSPGGPTSNMFAVGPYANEPQLVSPPVFSTYTTEPSTAPLTPP 1065
>07_03_1018 + 23326465-23326493,23326679-23327465
Length = 271
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 247 IGKFLQPLTRELAEIPPKPTIDELPGPVIERMV 345
+ + L PLT +L ++PP T+ +L P+ + V
Sbjct: 29 VARLLNPLTHQLTDLPPVTTLLDLLLPLCDLSV 61
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 559 VLACYYVFVLIHRKHDRDDILYNPGRIDT 473
VLAC +V V+ K D+ +Y+PG ++T
Sbjct: 102 VLACDFVVVITTGKDDKGLKIYDPGYLNT 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,164
Number of Sequences: 37544
Number of extensions: 368670
Number of successful extensions: 996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -