Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m24
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine r...    30   1.1  
Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.4  
U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic acety...    30   1.4  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    30   1.4  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    27   7.7  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    27   7.7  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    27   7.7  

>U00053-1|AAZ94293.1|  548|Caenorhabditis elegans Acetylcholine
           receptor protein 5 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 418 YGMTTETVIPHHQDVFPRSYQYDLDCIKYRR 510
           YGM   T++P+HQ   P +Y Y+ + ++ ++
Sbjct: 174 YGMINRTIVPYHQIWIPDTYLYNSEELEQKK 204


>Z74039-9|CAA98507.1|  564|Caenorhabditis elegans Hypothetical
           protein K03B8.9 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19747-1|AAA92689.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit precursor protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>U19746-1|AAA92688.1|  564|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 NSYGMTTETVIPHHQDVFPRSYQYDLDCIKYRRD 513
           N YGM   T+IP H    P +Y Y  + +K  RD
Sbjct: 119 NEYGMINSTIIPFHHLWIPDTYLY--NSVKMSRD 150


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = -3

Query: 540 FLF*SIASMIATIFYTIQVVLIRTRKYILM------MWYNSFSRHSIAVIS-IMENVSIR 382
           F F +++ +  T+  +    ++  + YI++      +   SF +HS+AVIS IM+N+   
Sbjct: 197 FFFLTLSIIFGTVILSTSYYILYAQLYIMLKSIKTRISNRSFKKHSVAVISTIMQNLVFA 256

Query: 381 SWFVNP 364
            +F+ P
Sbjct: 257 FFFLFP 262


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 85
            protein.
          Length = 2203

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 169  RRIFRGHMNLIWKYCF*DQLDDLSFPFLRNIADSSSVKKVIFK*FHGLW 23
            +R+ R    +  K+   + + D+    +R + D   VKK++F+ F  LW
Sbjct: 1403 KRVIRIMREICEKFPTFEMIPDMLARMIRRVTDEEGVKKLVFETFTTLW 1451


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +1

Query: 88  KMETTNHPTDPRSNISKLGSYD-PEKYVLDNVSSTVLTDESLTPGRPPCLTQRTIGKFLQ 264
           +M+++++ +D  S+  +  + D  +K + D +  T +  + +    PP L +      L 
Sbjct: 407 RMDSSDYGSDGISDCRESTASDGTQKTLSDRIEVTDIIFDKVKSPTPPPLRKLEQCTELP 466

Query: 265 PLTRELAEIPPKPTIDELPGPVIERMVQKDKAFWVD 372
           P  R++    P P     P P + R     K+  V+
Sbjct: 467 PKPRKMVSRSPSPVNKPPPSPKVSRATSPKKSQQVE 502


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 576 NLGMSTYWLVTMFL-F*SIASMIATIFYTIQVVLIRTRKYILM 451
           N+G  TYW  ++F+ F  +   +A +FY + V  +R R+ + M
Sbjct: 275 NIGYWTYWFASIFISFFPVFDPLA-MFYFLPVFRVRLRQILRM 316


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 123 SRISWMICRFHFYEILQIVRA*KKLFLNNF 34
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 123 SRISWMICRFHFYEILQIVRA*KKLFLNNF 34
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 123 SRISWMICRFHFYEILQIVRA*KKLFLNNF 34
           S++ W +C   F E  Q+ +  K++  NNF
Sbjct: 154 SKLMWKLCEDTFPEFNQLCKMDKRILFNNF 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,819,530
Number of Sequences: 27780
Number of extensions: 333529
Number of successful extensions: 1035
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)