Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m22
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 50 3e-07
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.1
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 26 5.4
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 5.4
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 5.4
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 7.1
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 9.4
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 50.0 bits (114), Expect = 3e-07
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 6/167 (3%)
Frame = +1
Query: 76 YLSITDILVTTEKVPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPL 255
Y I IL +KVPC +P +G + G VE+P WLAE L
Sbjct: 3 YYDIDSILSENQKVPCTSTVSIPGLGHEGRM-----VPTGSKVELPFWLAEVLAIN--SF 55
Query: 256 VSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLN-NTYRQ 432
VS+ +P + R L A+ +V + + H+Y + H I + ++ NT R
Sbjct: 56 VSIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKML-HLISDDSLVQISLNTLRS 114
Query: 433 RFRMLLAASMS-----SDSINTMQPLSASERIQAADASNTERSFLTW 558
R ++ AS++ + ++ L E+ + N RS + W
Sbjct: 115 RAMLIADASLNPQGALQQNSQFIEGLDDFEKHILRVSHNAHRSLINW 161
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 226 ESLYSRRPPL-VSVELPKIYKESYREILNADACAVDLHKLGQHF 354
E+ + PPL ++V ++ +SYR + DA V KL HF
Sbjct: 2861 EAAKEQYPPLNITVRRDHVFLDSYRALHFKDADEVKFSKLNIHF 2904
>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 141
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 493 LSASERIQAADASNTERSFLTWLQRGD 573
++ASE++ A + R F+TWL+ D
Sbjct: 1 MNASEKLSQKAAQSVTRRFITWLKSPD 27
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 253 LVSVELPKIYK-ESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNT 423
+ V LP++ + + + LN +A A+ L + ++ ++ Y+A++ K + TLN++
Sbjct: 102 IFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYANKEDADITLNDS 159
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +1
Query: 16 LKINNRIFPKQKQ------MSTENSGYLSITD-ILVTTEKVPCKFLHDLPKMGFLDPSAA 174
LK+ N + P+ + + + Y+S TD L+ + + + K+ F P
Sbjct: 204 LKLFNEVIPRLRHGNDGLIFTCTETPYVSGTDQSLLKWKPKEMNTIDFMLKLEFAQPEEG 263
Query: 175 DVDLKAGCSVEIPLWLAESLYS 240
D+D A ++ +W ++YS
Sbjct: 264 DIDYSAMPEFQLGVWEGRNMYS 285
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 QNLKINNRIFPKQKQMST-ENSGYLSITDILVTTEKVPC 123
Q ++ N + +K +S +NS ++S+ I+ T K PC
Sbjct: 767 QRTRLLNLLIIHEKLLSDKDNSAHISLRKIIYTLMKTPC 805
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 134 CKNLHGTFSVVTNMSVIDK*PEFSVDICFCFGNILL 27
C ++ T S+V+N I P F IC+ + NILL
Sbjct: 25 CCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILL 60
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 70 SGYLSITDILVTTEKVPCKFL 132
SGYLS+ +L T + P K+L
Sbjct: 393 SGYLSLLPLLFTLNEAPIKYL 413
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 206 STLQPAFRSTSAAEGSKNPILGRSCKNLHGTFSVVTNMSVIDK 78
ST+QP +GSK PI+ ++ +L V+ ++++DK
Sbjct: 524 STMQPLRLLFKCQDGSKYPIIFKNGDDLRQDQLVIQILTLMDK 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,161
Number of Sequences: 5004
Number of extensions: 48742
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -