Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m22
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1043 + 10565632-10565676,10565755-10565826,10566186-105662...    84   8e-17
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    29   3.2  
07_03_1436 - 26543846-26546806                                         29   4.2  
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    28   5.6  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    27   9.7  
04_03_0069 - 10665455-10666902,10669889-10670138                       27   9.7  

>08_01_1043 +
           10565632-10565676,10565755-10565826,10566186-10566289,
           10566482-10566574,10571044-10571183,10571297-10571427
          Length = 194

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
 Frame = +1

Query: 73  GYLSITDILVTTEKVPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPP 252
           GY  I DIL+  E +   F      +G LDP A    ++ G  V++P WLA  L S    
Sbjct: 3   GYYDIDDILMEEEPISVVFQVSANGVGLLDPGAERNSVEKGAKVDLPFWLAHGLLSLE-Q 61

Query: 253 LVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNTYRQ 432
            VS+ +P  + +  R+ + ADA  VDL     +FYELGC +        +   L   +  
Sbjct: 62  AVSINVPPCFTQKTRKEIQADAACVDLRIRCPYFYELGCKIVPLVNDRSIGLFLRYAFTS 121

Query: 433 RFRMLLAASMSSD--SINTMQPLSASERIQAAD-ASNTERSFLTWLQRGDTPLTTANMVA 603
           R++ +L+ S SS   ++    P    E  Q  + A ++  +F  W + G   L  A+++ 
Sbjct: 122 RYKEILSKSHSSSMMTVPKFVPRLTKEEAQVFESARDSMTAFKKW-RAGGVRLQKASILG 180

Query: 604 NHRKKK 621
             RK K
Sbjct: 181 RKRKTK 186


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 520 ADASNTERSFLTWLQRGDTPLTTANMVANHRKKK 621
           A +   +RS LTWL+ GD      ++ AN R++K
Sbjct: 721 AKSKKRQRSRLTWLKEGDANTKFFHIHANSRRRK 754


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 499 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKKK 621
           A+E  +A DA + +++S  TW  + DTP T  +   NH+ +K
Sbjct: 592 ANEYAKAEDAITASKQSGTTWKPKKDTPTTGGSGSNNHKDRK 633


>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 499 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKKK 621
           AS+  QA D  + +++S  TW  + DTP T  +   NH+ +K
Sbjct: 151 ASQDGQAEDVITASKQSGTTWKPKKDTPTTGGSGSTNHKDRK 192


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 499 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKKK 621
           A+E  +A DA + +++S  TW  + DTP    +   NH+ +K
Sbjct: 376 ANEYTKAEDAITASKQSGTTWKPKNDTPTAGGSGSNNHKDRK 417


>04_03_0069 - 10665455-10666902,10669889-10670138
          Length = 565

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 499 ASERIQAADA-SNTERSFLTWLQRGDTPLTTANMVANHRKKK 621
           A+E  +A DA + +++S  TW  + DTP    +   NH+ +K
Sbjct: 171 ANEYAKAEDAITASKQSGTTWKPKKDTPAVGGSRSNNHKDRK 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,554
Number of Sequences: 37544
Number of extensions: 289082
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)