Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m22
         (647 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014437-1|AAH14437.1|  216|Homo sapiens GINS complex subunit 3 ...   113   7e-25
BC005879-1|AAH05879.1|  216|Homo sapiens GINS complex subunit 3 ...   113   7e-25
CR457283-1|CAG33564.1|  138|Homo sapiens FLJ13912 protein.             31   4.7  
AK023974-1|BAB14747.1|  138|Homo sapiens protein ( Homo sapiens ...    31   4.7  

>BC014437-1|AAH14437.1|  216|Homo sapiens GINS complex subunit 3
           (Psf3 homolog) protein.
          Length = 216

 Score =  113 bits (271), Expect = 7e-25
 Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 10/192 (5%)
 Frame = +1

Query: 76  YLSITDILVTTEKVPCKFLHDLPKMG--FLDPSA-ADVD--LKAGCSVEIPLWLAESLYS 240
           +LS+ DIL++ EK+P +    +P++G  FL+ SA A+ D  +  G  +E+PLWLA+ L+ 
Sbjct: 19  FLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFD 78

Query: 241 RRPPLVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDI--KSEVAATL 414
            +  ++SVELPKIY+E +R + +AD   VDLHK+G HFY  G  +   D    ++++ +L
Sbjct: 79  NKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSL 138

Query: 415 NNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADASNTERSFLTWLQRGDTPLT 585
             T+  RFR ++ +S ++   D+   +  L   ER            F  W +   + +T
Sbjct: 139 LQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQIT 198

Query: 586 TANMVANHRKKK 621
            +N+V N++K+K
Sbjct: 199 ASNLVQNYKKRK 210


>BC005879-1|AAH05879.1|  216|Homo sapiens GINS complex subunit 3
           (Psf3 homolog) protein.
          Length = 216

 Score =  113 bits (271), Expect = 7e-25
 Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 10/192 (5%)
 Frame = +1

Query: 76  YLSITDILVTTEKVPCKFLHDLPKMG--FLDPSA-ADVD--LKAGCSVEIPLWLAESLYS 240
           +LS+ DIL++ EK+P +    +P++G  FL+ SA A+ D  +  G  +E+PLWLA+ L+ 
Sbjct: 19  FLSLDDILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFD 78

Query: 241 RRPPLVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDI--KSEVAATL 414
            +  ++SVELPKIY+E +R + +AD   VDLHK+G HFY  G  +   D    ++++ +L
Sbjct: 79  NKRRILSVELPKIYQEGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADISQSL 138

Query: 415 NNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADASNTERSFLTWLQRGDTPLT 585
             T+  RFR ++ +S ++   D+   +  L   ER            F  W +   + +T
Sbjct: 139 LQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQKGLNDFQCWEKGQASQIT 198

Query: 586 TANMVANHRKKK 621
            +N+V N++K+K
Sbjct: 199 ASNLVQNYKKRK 210


>CR457283-1|CAG33564.1|  138|Homo sapiens FLJ13912 protein.
          Length = 138

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +1

Query: 361 LGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADAS 531
           LG +  +    +E    +  T+  RFR ++ +S ++   D+   +  L   ER       
Sbjct: 43  LGAFFLERSAGAETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 102

Query: 532 NTERSFLTWLQRGDTPLTTANMVANHRKKK 621
                F  W +   + +T +N+V N++K+K
Sbjct: 103 KGLNDFQCWEKGQASQITASNLVQNYKKRK 132


>AK023974-1|BAB14747.1|  138|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13912 fis, clone Y79AA1000230. ).
          Length = 138

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +1

Query: 361 LGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSS---DSINTMQPLSASERIQAADAS 531
           LG +  +    +E    +  T+  RFR ++ +S ++   D+   +  L   ER       
Sbjct: 43  LGAFFLERSAGAETDNAVPQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQTGQ 102

Query: 532 NTERSFLTWLQRGDTPLTTANMVANHRKKK 621
                F  W +   + +T +N+V N++K+K
Sbjct: 103 KGLNDFQCWEKGQASQITASNLVQNYKKRK 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,300,957
Number of Sequences: 237096
Number of extensions: 1641565
Number of successful extensions: 2587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2583
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)