Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m22
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical ...    49   2e-06
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024847-1|AAK29961.1|  193|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.8 protein.
          Length = 193

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = +1

Query: 70  SGYLSITDILVTTEKVPCKF-LHDLPKMGFLDPSAADVDLKA--GCSVEIPLWLAESLYS 240
           S +  + DI+  ++   C F + DL    F +        +   G  V+ P WL ES+ S
Sbjct: 11  SKFFDLDDIIAKSDSTSCTFEIGDLNPDFFQEMLGVSKPTQNADGYGVDAPYWLLESVRS 70

Query: 241 RRPPLVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAK 381
                 S++LPK Y  + + +LNAD+  ++L  L QHFY  G  + +
Sbjct: 71  S----FSIQLPKAYSVNMQNVLNADSKKLNLSGLQQHFYGNGMQLCR 113


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 364 GCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSSDSINTMQPLSASERIQAADASNT 537
           G Y A HD KS      NN  R+   MLL+  M+ +S    Q  S   R  +  +SN+
Sbjct: 112 GGYYAVHDTKSSSNTLNNNIPRRSSAMLLSPEMAMNS--EQQKNSKKRRSSSRSSSNS 167


>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +1

Query: 319 CAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSSDSINTMQPLS 498
           C  DLHK+G    ++          ++    LNN +    R  ++ ++ +   N +QPL 
Sbjct: 327 CISDLHKIGYTHLDIRPSSFSLLRNNKAVVVLNNFFNSETRQNISRNIRTTKHNGLQPLY 386

Query: 499 ASERIQAADASNTE 540
             +   A + S  E
Sbjct: 387 VQQSRHARNKSERE 400


>Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical
           protein M7.12 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 379 KHDIKSEVAATLNNTYRQRFRMLLAASMSSDSINT 483
           KHD ++EV   LNN +R    +  AA M+   I +
Sbjct: 30  KHDNRNEVVDFLNNNFRVEEPLSKAAGMTESDIQS 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,902
Number of Sequences: 27780
Number of extensions: 267149
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)