Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m22
(647 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.36
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.36
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.36
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.36
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.48
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.48
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.48
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.48
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.5
AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein. 22 4.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 5.9
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.36
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 273
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.36
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 273
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.36
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 273
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.36
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 273
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 323
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 279
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 279
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 279
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.48
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 279
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 325
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 1.5
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +1
Query: 115 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 273
VPC + + +GF P + L G ++ + L + ++ + P S +P
Sbjct: 240 VPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVP 292
>AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein.
Length = 57
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 289 SYREILNADACAVDLHKLGQ 348
S++ +N ACA + H LG+
Sbjct: 25 SFKGQVNDSACAANCHSLGK 44
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 544 ISQY*KHLQLVFSH*QKVVALCLLSHSTYWQPITF 440
++QY K +L FS ++V+ L W P TF
Sbjct: 88 LNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTF 122
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 7.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 269 NSTLTRGGLLEYKDSASHSGISTLQPAFRSTSA 171
N ++TR GL +DS+ G + FR A
Sbjct: 337 NPSITRTGLSSVRDSSIICGGNKRSQVFRGRDA 369
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,939
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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