Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m21
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    40   2e-04
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   3.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   4.2  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   5.6  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   7.4  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   7.4  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||...    25   9.8  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +2

Query: 290 LLVQSLVKQLCSLLQKDSIIANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQ 469
           +L+ +L++  C L   +   + +L+  IC  L  + +++  Y + E  A+RS YQ AL+ 
Sbjct: 41  MLLTALLENFCQLYDNNPAKSKRLFALICHTLQKIGILEEEY-IEELAAVRSNYQDALHH 99

Query: 470 LVTVA 484
           L+  A
Sbjct: 100 LILQA 104


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 350 ANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQLVTVASG 490
           A QL NK+ E LHS +L  N     E  +     QR L  L+    G
Sbjct: 508 ATQLLNKLVECLHSSDLGLNDTTPNEKLSTEYNQQRLLLALILYELG 554


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 23/101 (22%), Positives = 43/101 (42%)
 Frame = +2

Query: 170 ALATVKSFDLGISASHHESFVQQSRQQIDVINAPTTTPISLLVQSLVKQLCSLLQKDSII 349
           AL  VK   L +S S  E     ++ +   I         L +   V++  S+    + +
Sbjct: 469 ALTEVKHLKLCLSDSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEM 528

Query: 350 ANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQL 472
             +L  +I    + +N    S  + EFE +++QY++ L  L
Sbjct: 529 NQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNL 569


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 356 QLYNKICEKLHSMNLIDNSYAMG 424
           Q+Y ++C   HS+NLI   + +G
Sbjct: 96  QVYREVCSACHSLNLIAWRHLVG 118


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +1

Query: 10  KDGKIKMHFANRVNASVRWHWPDFYELKILKTSNFD 117
           ++ K+  H  +   ++  ++WP  +++ +L   +FD
Sbjct: 92  RESKLVSHVCSLFTSAFVFNWPKHFDIPLLSLPSFD 127


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +2

Query: 362 YNKICEKLHSMN-----LIDNSYAMGEFEAMRSQYQRALYQ 469
           YN I  +L S+N     +    YA+ EF+A+   +++ L Q
Sbjct: 80  YNSINAELESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 249 CCLLCCTNDSW*LADM 202
           C   CCT++ W LAD+
Sbjct: 357 CIKYCCTSNGWSLADI 372


>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 204 MPKSKDFTVANAFHLSWLCLSIFY*LLTTIKI 109
           M + KDFT+A+A   S  C+++   +L  + +
Sbjct: 189 MKRLKDFTIASADSKSGCCITVLIIILIALLV 220


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/65 (21%), Positives = 27/65 (41%)
 Frame = +2

Query: 221 ESFVQQSRQQIDVINAPTTTPISLLVQSLVKQLCSLLQKDSIIANQLYNKICEKLHSMNL 400
           +S++   + Q +          S   +   K L   ++ ++ IA +LYN IC      + 
Sbjct: 604 KSYLNSFKVQAECSEISKILSFSQETEKKYKFLLQTVRNETEIARELYNIICRAEERYSQ 663

Query: 401 IDNSY 415
            +N Y
Sbjct: 664 YENRY 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,670
Number of Sequences: 5004
Number of extensions: 39265
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)