Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m21
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0591 - 4694710-4695270                                           30   1.4  
11_01_0587 - 4662277-4662837                                           30   1.4  
11_01_0575 + 4601904-4602458                                           30   1.4  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    27   7.5  
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209...    27   7.5  
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097...    27   10.0 

>11_01_0591 - 4694710-4695270
          Length = 186

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 294 RRLIGVVVGALMTSICCLLCCTNDSW*LADMPKSKDFTVANAFHLSWLCLSIFY*LLTTI 115
           R L G +VG L     C+  C   S    DM   ++ T+A+ FH +W  L + + L+T I
Sbjct: 128 RDLDGFLVGFLKQPPICMSACPIRS---CDM---EEVTIADKFHQAWKMLGVAHDLITQI 181


>11_01_0587 - 4662277-4662837
          Length = 186

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 294 RRLIGVVVGALMTSICCLLCCTNDSW*LADMPKSKDFTVANAFHLSWLCLSIFY*LLTTI 115
           R L G +VG L     C+  C   S    DM   ++ T+A+ FH +W  L + + L+T I
Sbjct: 128 RDLDGFLVGFLKQPPICMSACPIRS---CDM---EEVTIADKFHQAWKMLGVAHDLITQI 181


>11_01_0575 + 4601904-4602458
          Length = 184

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 294 RRLIGVVVGALMTSICCLLCCTNDSW*LADMPKSKDFTVANAFHLSWLCLSIFY*LLTTI 115
           R L G +VG L     C+  C   S    DM   ++ T+A+ FH +W  L + + L+T I
Sbjct: 126 RDLDGFLVGFLKQPPICMSACPIRS---CDM---EEVTIADKFHQAWKMLGVAHDLITQI 179


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
 Frame = +2

Query: 257 VINAPTTTPISLLV----QSLVKQLCSLLQKDSIIANQLYN----KICEKLHSMNLIDNS 412
           +++   TT I L++    QSL K   S   +  ++ N+L N    K C KLH MNL + +
Sbjct: 418 IMSKVVTTTIQLILYGGLQSLQKVDPSFDFRGIVVLNRLSNSESIKNCNKLHEMNLENRA 477

Query: 413 YAM 421
            A+
Sbjct: 478 QAL 480


>11_01_0283 -
           2095291-2095566,2095962-2096348,2096523-2096881,
           2097275-2097398,2097480-2097548,2098536-2098584,
           2099185-2099299,2099823-2099872,2099969-2100106,
           2101136-2101197,2102066-2102180,2103433-2103664,
           2103748-2103826,2103925-2103993,2104079-2104171,
           2104577-2104622,2105223-2105268,2105354-2105411,
           2105577-2105615,2105712-2105783,2105930-2106021,
           2106824-2106923
          Length = 889

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 212 SHHESFVQQSRQQIDVINAPTTTPISLLVQSLVKQ--LCSLLQKDSIIANQLYNKICEKL 385
           ++ E ++QQS Q  DV+  P  T    L+    K   L S+ ++D     QL  K   + 
Sbjct: 699 AYPEQYMQQSAQDCDVLADPNITQDPRLMTQADKDRGLGSVFKRDDERLKQLREKDARE- 757

Query: 386 HSMNLIDNSYA 418
              N I +SY+
Sbjct: 758 KDPNFISDSYS 768


>04_04_1155 -
           31308704-31309051,31309301-31309451,31309532-31309763,
           31309854-31310064,31310304-31310422,31310507-31310581,
           31310789-31310990,31311075-31311454,31311569-31311633,
           31311735-31311779,31312166-31312231,31312667-31312741,
           31313022-31313093,31313659-31313727,31313813-31313884,
           31313995-31314066,31314441-31314512,31314597-31314668,
           31315091-31315162,31315279-31315474,31316094-31316202
          Length = 924

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 281 PISLLVQSLVKQLCSLLQKDSIIANQLYNKICEKLHSMNLIDNSY 415
           PI   + +LV QL SL+ ++  I++ L +    K  S+NL+D SY
Sbjct: 255 PIPSALSNLV-QLSSLILRNCKISDNLASIDFSKFASLNLLDFSY 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,002
Number of Sequences: 37544
Number of extensions: 216126
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)