Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m20
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.49
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 28 0.85
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.6
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.6
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 26 3.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 3.4
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 6.0
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 6.0
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 7.9
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 7.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.9
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.49
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 407 ENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPS 568
E+ S S + + + SSS S + +ESE +V+ KT E SS+ S
Sbjct: 88 ESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESS 141
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 0.85
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 VTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTS--ENNFPSSDPSD 571
VT+++++ ++ K++++ Q + E K+LYK++ + PS SD
Sbjct: 18 VTKIRKLTAAKKNELQNRKCNQASNEEKKILYKSNFLDRFIPSKANSD 65
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 168 YSAFHNNHSGNHKPKFLTWLFHVS 97
Y F N + H + L+WLFH+S
Sbjct: 558 YEGFQNYYYSCHNGRKLSWLFHLS 581
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 458 SSSKHQIEQSVQGQYNESEAKVLYKTSEN 544
SSS+ EQ +Q +E + Y TSEN
Sbjct: 1173 SSSERSNEQDIQNNLDEDTVSLAYGTSEN 1201
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 467 KHQIEQSVQGQYNESEAKVLYKTSENNFPSSDPSD 571
KH S ++NES V YK +++ P S P D
Sbjct: 86 KHSCTPSFLRKFNESIENVSYKCLDHSPPDSVPGD 120
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 277 STQCTSKEIPYDAVPVLGTW*DTAAWSAQGHHQTS 173
ST C +P AV ++G + D WS+ H+ S
Sbjct: 201 STLCDMLPVPQFAVRLMGLYFDNVGWSSHIIHRPS 235
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 326 TDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYN 505
T + +Q LN T +S +EN SKPS+ + S++HQI+ G N
Sbjct: 60 TQRNRKFSSLQKHLNTETPSFS-VS-IENPSKPSAAFNDASLGKKSTEHQIDGIRNGSSN 117
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +2
Query: 467 KH-QIEQSVQGQYNESEAKVLYKTS----ENNFPSSDPSD 571
KH +I Q + G+ E +A+ K S ENN P S PSD
Sbjct: 246 KHPEIYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSD 285
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 276 VPNARRKKFLMTRYLCLVRGEIRRRGVRKVITKRR*YSAFHNNHSG---NHKPKF 121
+P +++KF+ T +L + + + + +TKR+ Y +N + H PKF
Sbjct: 657 IPERKKEKFIRTVFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKF 711
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 157 KSTVSATFGDDLAHSTPPYLTTYQAQVPRHKEFLSTCIGYFITTIHKDK 303
K +V DDLA +TP L + Q+ K+ +S + T++K+K
Sbjct: 70 KQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSV-----VKTLYKEK 113
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 403 VANILA-MSGRFIQLILDATQSMSQVGDVDR 314
+ N+LA + IQ+ LD +++ +VG++DR
Sbjct: 424 LCNLLACQDNKIIQVALDGIENILRVGELDR 454
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 386 CQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQ-GQYNESEAKVLYKTSENN 547
C+ + EN+ S V E++Q S+ H I+ + Q + E ++ K +N
Sbjct: 190 CESANSTENVCFSVSTVDEIQQRHPSAGHSIDSTCQSNSFLEGDSATHKKKKTDN 244
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 413 ISKPSSNVTELKQVPSS---SKHQIEQSVQGQYNESEAKVLYKTSENN 547
++ P++ E ++ +S ++ I+QS+ +Y + +KV K ++NN
Sbjct: 296 VANPTAGELEFRKNKASRMTTQKHIDQSILDRYGDGTSKVKDKKAKNN 343
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 350 GIQNQLNEAT--RHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEAKV 523
G+ + +E + RH S N + PSS++ K + +S Q++++ G N E
Sbjct: 433 GLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQLKKNPDG--NLVETSE 490
Query: 524 LYKTSENNFPSSDPS 568
L + EN+ S+ S
Sbjct: 491 LSDSDENSVLSNKSS 505
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,491
Number of Sequences: 5004
Number of extensions: 48730
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -