Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m19
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   1.5  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   1.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   3.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   5.9  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   7.8  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    25   7.8  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   7.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   7.8  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 197 STVNILRNSELNSTFLLILKMLK*CYIMLYNSMQTFVTKQRILNAK-IILDLIGLTFS 27
           S +  L +S L S   L+LK  +  YI+L+N M     +  I +A  +++ LI L F+
Sbjct: 826 SLIEPLPDSLLKSLADLLLKNSQELYIILFNGMVFTFPRDNISDASAVLIPLIRLVFA 883


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +2

Query: 188 LRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQ 367
           L+ + I+ +L G  P  V    +   +++  +  +H+LL + + + L   EK ++   K+
Sbjct: 78  LQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKE 137

Query: 368 DPIPYVPI 391
             I  +P+
Sbjct: 138 REISEIPV 145


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 416 LVEDWGKGEIGLPSLKQEEIQAARL-IVIRRKKMKKTSKEEALEED 550
           L+E+    E     LKQE+I A R     R K+MK+T K++  EED
Sbjct: 154 LIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFKDDP-EED 198


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 158 LNSIQNSVKYLRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSP 313
           L+S+ N +  L    +K+T       ++  +I  +  E+N L   +   FSP
Sbjct: 828 LDSVPNGMHELLLNEVKSTSNQTMQSKIARLIFRVGNEENPLVYPNNATFSP 879


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 434 KGEIGLPSLKQEEIQAAR 487
           + E+GLPS+K E+IQ  +
Sbjct: 357 RAEMGLPSVKNEDIQVQK 374


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 157 VEFNSEFRKIFTVDK 201
           V+F SEF +IFTVD+
Sbjct: 264 VQFKSEFPEIFTVDE 278


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 309 HRVLLVLRLQKNLKSAE*NKTQSLMYLYSILDPFCLLWKIGVRARLVY 452
           +RV + L L + + +A   +   L  +Y+IL  FCL  ++ + ++  +
Sbjct: 236 YRVFIELHLNEEIAAAFVLQKPILPLIYNILHKFCLYQRLNLLSQQTF 283


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 197 INIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPI 376
           I+ K   R  TP  + ++IA++ K+K        +   P  V L   E   + R+ Q  I
Sbjct: 130 IDGKKITRPATPAALDSLIASIDKDKGWTGIVDPMTGKP--VNLTTEELGLLKRLAQSEI 187

Query: 377 P 379
           P
Sbjct: 188 P 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,400
Number of Sequences: 5004
Number of extensions: 47505
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)