Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m19
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF106584-1|AAC78221.1| 360|Caenorhabditis elegans Hypothetical ... 31 0.77
Z92803-5|CAB07239.1| 319|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical ... 29 2.4
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical pr... 28 5.4
U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 7.2
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 27 7.2
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 7.2
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 7.2
>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
F57C7.1b protein.
Length = 1087
Score = 31.5 bits (68), Expect = 0.44
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Frame = +2
Query: 227 TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 397
TP +P +I+ L + + K++ P + KP+ S +PY P N
Sbjct: 756 TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815
Query: 398 PRSILPLVEDWGKGEIGLPSLKQEEI------QAARLIVIRRKKMKKTSKEEALEEDEAS 559
PR P K I P+ E I + + I +K+ T+ + L E AS
Sbjct: 816 PRGRKPKKSGRPKKNIYSPATVSERISQQPPFEVTPYVSIYGRKVVGTNDKIELSERMAS 875
Query: 560 LGQ 568
+ Q
Sbjct: 876 IPQ 878
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
F57C7.1a protein.
Length = 1209
Score = 31.5 bits (68), Expect = 0.44
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Frame = +2
Query: 227 TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 397
TP +P +I+ L + + K++ P + KP+ S +PY P N
Sbjct: 756 TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815
Query: 398 PRSILPLVEDWGKGEIGLPSLKQEEI------QAARLIVIRRKKMKKTSKEEALEEDEAS 559
PR P K I P+ E I + + I +K+ T+ + L E AS
Sbjct: 816 PRGRKPKKSGRPKKNIYSPATVSERISQQPPFEVTPYVSIYGRKVVGTNDKIELSERMAS 875
Query: 560 LGQ 568
+ Q
Sbjct: 876 IPQ 878
>AF106584-1|AAC78221.1| 360|Caenorhabditis elegans Hypothetical
protein F54A5.2 protein.
Length = 360
Score = 30.7 bits (66), Expect = 0.77
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 415 RQNGSRIEYRYIRDWVLFYSADLRFFCNL 329
R+NG I Y +I+ W S ++ FCNL
Sbjct: 229 RRNGKTIFYNHIKAWAFPTSNEVNIFCNL 257
>Z92803-5|CAB07239.1| 319|Caenorhabditis elegans Hypothetical
protein K01G5.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Frame = +2
Query: 260 LPKEKNELSATHKLL-----FSPRTVGLEITEKPQISRVKQDPIPYVPILNPRSILPLVE 424
LP+ E T LL R++ E + K + ++ D VP+L +LP+ E
Sbjct: 207 LPEPTKETPKTDALLTPGSHIKGRSMAAE-SSKRKAPKLPTDLTNLVPLLQQAQMLPVTE 265
Query: 425 DWGKGEIGLPSLKQ----EEIQAARLIVIRRKKMKKTSKEEALE 544
K ++ P E + +I++KK + TSK+ ALE
Sbjct: 266 KATKEKLQTPKQSPMPGTPENTSLPPSLIKKKKKESTSKQAALE 309
>AC006795-1|AAF59492.2| 435|Caenorhabditis elegans Hypothetical
protein Y50D4B.7 protein.
Length = 435
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 299 LLFSPRTVGLEITEKPQISRVKQDPIPYVPILNPRSILPLVEDWGK 436
++ +P GL + + + I Y PI + I+PL DWG+
Sbjct: 33 IISAPIAYGLTVLTSNGSEPMSHENISYTPIRSRGDIIPLNPDWGE 78
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +2
Query: 263 PKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYVPILNPRSILPLVEDWGKGE 442
P EK+E + P+ L E + ++K + + LN + E G+
Sbjct: 19 PSEKSEKDVLGIVRTGPKK--LITGESSSLFKLKNELLKRKDRLNSEVHIKHTETHVSGK 76
Query: 443 IGLPSLKQEEIQA-ARLIVIRRKKMKKTSKEEALEEDEASL 562
L S K+EE + AR R+ +++K + EEDEA L
Sbjct: 77 SNLLSTKKEEKERQARKDESRKLRIEKNERAVRREEDEARL 117
>Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical
protein C49F8.1 protein.
Length = 407
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 278 ELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYVPILN 397
+LSA H ++ P+ ++++ P S P+P P LN
Sbjct: 257 QLSAHHGYVYGPQQAMPQLSQYPSPSTAAPAPVPEQPTLN 296
>U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical
protein F59A3.7 protein.
Length = 260
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 146 ILKMLK*CYIMLYNSMQTFVTKQRILNAKIILDLIGLTFSL*LVTF 9
ILKM+K +++ S+ F+ KQ + N K + + L F + TF
Sbjct: 215 ILKMMKTRKEVMFQSVPAFLNKQELYNLKKLFSINFLRFLVDCFTF 260
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 242 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 385
P+++ +E+ +L +LLFS R VG + + K+D P V
Sbjct: 187 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 234
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 242 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 385
P+++ +E+ +L +LLFS R VG + + K+D P V
Sbjct: 51 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 98
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 242 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 385
P+++ +E+ +L +LLFS R VG + + K+D P V
Sbjct: 205 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 252
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 242 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 385
P+++ +E+ +L +LLFS R VG + + K+D P V
Sbjct: 187 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,715
Number of Sequences: 27780
Number of extensions: 260324
Number of successful extensions: 656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -