Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m19
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.13 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 265 WKISNNIWYTFRCYPPQCSFNV 200
           W+I+NN++Y    YPP  +FN+
Sbjct: 219 WRITNNLFYP---YPPYGTFNI 237


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 468 SCLSEGRPISPLP 430
           SCL  G P+ PLP
Sbjct: 433 SCLIHGPPLPPLP 445


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 468 SCLSEGRPISPLP 430
           SCL  G P+ PLP
Sbjct: 433 SCLIHGPPLPPLP 445


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 392 LNPRSILPLVEDWGK 436
           + P ++LPL++ WG+
Sbjct: 182 VTPFTVLPLLKVWGR 196


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 266 KEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDP 373
           +  + L   HK+L   ++  ++  E  QIS+ K  P
Sbjct: 241 RHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSP 276


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 392 LNPRSILPLVEDWGK 436
           + P ++LPL++ WG+
Sbjct: 182 VTPFTVLPLLKVWGR 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,430
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)