Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m18
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    27   2.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.2  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   4.2  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   4.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   7.4  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   9.8  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +2

Query: 20  CELQYLVLFT*FNK-SHKNKEMLYDDFKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQL 196
           C+L+  +L+T      HK  +++YD F+    + LN     Q      M      +  QL
Sbjct: 337 CQLRNFLLYTHIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYISEQTQL 396

Query: 197 MAVYIARYCVENVVDRDELAEVIE 268
           +   + +   E   +++   E++E
Sbjct: 397 VEEALTKVMKEKYREKENNLELLE 420


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 29   QYLVLFT*FNKSHKNKEMLYDDFKPIVDLVLNNWTALQLAV 151
            Q+ VL + F + H     LY   K   DL++NN    +L +
Sbjct: 1357 QFTVLQSRFQRDHLWSHYLYQPLKGEEDLIINNQAVSKLPI 1397


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 313 RFIMADSIKLFIHEIFYHFSQLISIHYI 230
           R +M  ++ L     +YHF QL+  HYI
Sbjct: 240 RLVMPPALFLIFATPWYHFIQLVLPHYI 267


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -1

Query: 320  LSEIHHGRQYQTLHP*DLLSLQPTHLYPLHFQHNILLYTLPLTVPSFRPLE 168
            L E   GR Y +     L  + P HL  L     +L Y+ PL+ P  R L+
Sbjct: 1094 LHESRSGRVYMS----PLTEISPEHLARLAKNTTLLSYSKPLSYPPIRYLD 1140


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 524 NVSNVDEIGKDKQDSEPMDEDVEPGWTVVRT 616
           ++S  + +G D+Q  E  DED EP    V+T
Sbjct: 401 SLSEPESLGLDQQVDEDEDEDYEPPEVDVQT 431


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = +2

Query: 143 LAVEHGMGAPGGEKTAQLMAVYIARYCVENVVDRDELAEVIEDLMDEEFDTVCHDESPKE 322
           LA E G      ++  + +      Y  E+++D +E A+V E+ ++EE +    D +P+ 
Sbjct: 39  LAAEEGQSVLDEQEIEEALEEDDTNY-EEDIIDDEESAQVDEEELEEEEEEE-EDATPEP 96

Query: 323 IANXXXXXXXXXKEGHHDELRA 388
           +           K G   + +A
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKA 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,909
Number of Sequences: 5004
Number of extensions: 43830
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)