Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m18
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    32   0.47 
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004...    29   4.4  
09_02_0444 - 9444340-9444829,9444985-9445688                           28   7.7  

>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 158 GMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIEDL 274
           G G+PGGE+ A+ MA+ I  +C++ V  +R  + +V+E L
Sbjct: 606 GAGSPGGEEIARKMAL-IGLWCIQTVPANRPSMGKVLEML 644


>08_02_1197 +
           25199614-25199795,25200241-25200308,25200309-25200400,
           25200940-25201019,25201418-25201535,25202371-25202562
          Length = 243

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 107 VDLVLNNWTALQLAVEHGMGAPGGEKTAQLMA 202
           + LV   WTALQ+AVE+  G       A  +A
Sbjct: 24  IGLVFGRWTALQMAVENQWGGRDSRAKADQLA 55


>09_02_0444 - 9444340-9444829,9444985-9445688
          Length = 397

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 383 RARIEAMPKCQKWLSQPIHESVPPQH 460
           R  ++A+P   +W S P H+  PP H
Sbjct: 235 RFSLDALPAGLRWSSSPQHDDEPPFH 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,764
Number of Sequences: 37544
Number of extensions: 266938
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)