Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m18
         (665 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071640-1|AAL49262.1|  195|Drosophila melanogaster RE68515p pro...    90   2e-18
AE014297-3914|AAF56562.1|  195|Drosophila melanogaster CG14543-P...    90   2e-18
AY049775-1|AAL12211.1|  422|Drosophila melanogaster histamine-ga...    30   2.5  
AF435470-1|AAL74414.1|  422|Drosophila melanogaster histamine-ga...    30   2.5  
AF382402-1|AAL66187.1|  422|Drosophila melanogaster histamine-ga...    30   2.5  
AE014297-1379|AAN13530.2|  422|Drosophila melanogaster CG14723-P...    30   2.5  
AY071000-1|AAL48622.1|  220|Drosophila melanogaster RE08857p pro...    29   5.7  
AE014134-1809|AAF52892.1|  220|Drosophila melanogaster CG4946-PA...    29   5.7  

>AY071640-1|AAL49262.1|  195|Drosophila melanogaster RE68515p
           protein.
          Length = 195

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
 Frame = +2

Query: 92  DFKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIE 268
           +F+ IV+ + N+W  L+LAVEHGMG   G++ A  +  Y  +YCV N  + + EL EV+E
Sbjct: 12  NFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDYTYQYCVSNENITQGELVEVLE 71

Query: 269 DLMDEEFDTVCHDESPKEIANXXXXXXXXXKEGHHDELRARIEAMPKCQKWLSQPIHESV 448
           +LMD+EF+T+C D+S  EI           ++    ++ A +  +P  ++WL   +  + 
Sbjct: 72  ELMDQEFNTLCDDDSIPEICRNLLRYKLMAQQNQFPQIEAELSKLPAGKEWLRPDVKITY 131

Query: 449 PP 454
            P
Sbjct: 132 TP 133


>AE014297-3914|AAF56562.1|  195|Drosophila melanogaster CG14543-PA
           protein.
          Length = 195

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
 Frame = +2

Query: 92  DFKPIVDLVLNNWTALQLAVEHGMGAPGGEKTAQLMAVYIARYCVENV-VDRDELAEVIE 268
           +F+ IV+ + N+W  L+LAVEHGMG   G++ A  +  Y  +YCV N  + + EL EV+E
Sbjct: 12  NFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDYTYQYCVSNENITQGELVEVLE 71

Query: 269 DLMDEEFDTVCHDESPKEIANXXXXXXXXXKEGHHDELRARIEAMPKCQKWLSQPIHESV 448
           +LMD+EF+T+C D+S  EI           ++    ++ A +  +P  ++WL   +  + 
Sbjct: 72  ELMDQEFNTLCDDDSIPEICRNLLRYKLMAQQNQFPQIEAELSKLPAGKEWLRPDVKITY 131

Query: 449 PP 454
            P
Sbjct: 132 TP 133


>AY049775-1|AAL12211.1|  422|Drosophila melanogaster histamine-gated
           chloride channelsubunit B protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 YCVENVVDRDELAEVIEDLMDEEFDTVCH 304
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AF435470-1|AAL74414.1|  422|Drosophila melanogaster histamine-gated
           chloride channelalpha2 subunit protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 YCVENVVDRDELAEVIEDLMDEEFDTVCH 304
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AF382402-1|AAL66187.1|  422|Drosophila melanogaster histamine-gated
           chloride channelsubunit 1 variant protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 YCVENVVDRDELAEVIEDLMDEEFDTVCH 304
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AE014297-1379|AAN13530.2|  422|Drosophila melanogaster CG14723-PB,
           isoform B protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 218 YCVENVVDRDELAEVIEDLMDEEFDTVCH 304
           Y  EN+ D D+L    E +++ ++DT CH
Sbjct: 362 YSDENISDLDDLKHHRESIIEPQYDTFCH 390


>AY071000-1|AAL48622.1|  220|Drosophila melanogaster RE08857p
           protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 313 RFIMADSIKLFIHEIFYHFSQLISIHYIFNTISCYIH 203
           R I+    ++F+H   +HF +++SI    +  +CY H
Sbjct: 153 RKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKH 189


>AE014134-1809|AAF52892.1|  220|Drosophila melanogaster CG4946-PA
           protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 313 RFIMADSIKLFIHEIFYHFSQLISIHYIFNTISCYIH 203
           R I+    ++F+H   +HF +++SI    +  +CY H
Sbjct: 153 RKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKH 189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,621,307
Number of Sequences: 53049
Number of extensions: 471176
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)