Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m18
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 53  FNKSHKNKEMLYDDFKPIVDLVLNNWTALQLAVEHGMGAPG 175
           +  +   ++M Y  F P   + + N T  Q   +HG G  G
Sbjct: 66  YGAAGSQQDMPYPRFPPYNRMDMRNATYYQHQQDHGSGMDG 106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 206 TLPLTVPSFRPLELPYHVQQLVVK 135
           TLP +  S  P ELP H+   + K
Sbjct: 366 TLPTSTYSGSPTELPKHLPTSLTK 389


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 189 AVFSPPGAPIPCSTASC 139
           A   PP  P+P  T++C
Sbjct: 176 ASMDPPEPPVPTVTSAC 192


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 251 THLYPLHFQHNILLYTLPLTVPSFRPLEL 165
           +HL  L+ Q+N++ +   LT    R LE+
Sbjct: 866 SHLRELYLQNNLIGFIGNLTFLPLRSLEI 894


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,534
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)