Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m15
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    24   3.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    23   7.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    22   9.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    22   9.7  

>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 91  RNVRWWDSEIMSANL 135
           RNV + D EIM ANL
Sbjct: 513 RNVNYTDEEIMGANL 527


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 81  PFKLEFKIASRQKYAGLCYSHTYRTI 4
           P  L+ ++   ++  G  YSH Y TI
Sbjct: 248 PISLKSELVPNEELLGEEYSHIYHTI 273


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 144  FYY*ICRHDLGIPPPYITAL-SPFKLEFK 61
            F+Y +C +    P P+I A+   F+  FK
Sbjct: 1004 FFYSLCSNPFQKPVPFIPAIDDTFEFYFK 1032


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   EYCAICVRVTQSCIFLSRSYF 63
           E+C IC R  QS  F   S F
Sbjct: 212 EFCQICEREIQSWFFELHSKF 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,241
Number of Sequences: 5004
Number of extensions: 12792
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)