Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m15
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0990 + 23374562-23376196                                         27   2.8  
06_01_0300 - 2179413-2179634,2179736-2179839,2179907-2179982,218...    26   4.8  
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126...    25   8.4  

>08_02_0990 + 23374562-23376196
          Length = 544

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 53  EAILNSSLKGDRAVM*GGGIPRS 121
           EAI    L G+R V+ GGG PRS
Sbjct: 332 EAITPIDLPGERVVVEGGGEPRS 354


>06_01_0300 -
           2179413-2179634,2179736-2179839,2179907-2179982,
           2180423-2180536
          Length = 171

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 110 SHHLTLRLYHLLNWNLK*LRDKNMQDCVTLTHIAQ 6
           S    L+ YHL  W++K  + K +   VT  ++ Q
Sbjct: 19  SRKSVLQCYHLNEWSVKRAQKKKLMSTVTRAYLDQ 53


>04_01_0122 +
           1267048-1267149,1267764-1267855,1268137-1268234,
           1268333-1268488,1268736-1269355,1269480-1269547,
           1269848-1270099,1270390-1270525,1271054-1271246,
           1271386-1271939
          Length = 756

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 174 FNSRIHNPHYFYY*ICRHDLGIPPPYITALSPFKLEFK 61
           F+SR   P Y Y  + + D+  P   I A SP   EFK
Sbjct: 494 FSSR--GPSYIYPGVLKPDIAAPGVAILAASPNTPEFK 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,969,866
Number of Sequences: 37544
Number of extensions: 76590
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)