Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m13
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   0.45 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   0.59 
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    29   0.78 
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   1.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   3.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   7.3  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   7.3  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   9.7  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.7  

>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +3

Query: 360 STQTGPSGL-VESLEMVRRGIILEQAANQRPLKGILNAASALDAFK*STRITKLKLTSRP 536
           S+ T PS   + S  +V R       A     KG+ NAAS+  +F  S  I+K   TSR 
Sbjct: 589 SSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRL 648

Query: 537 SIVTVP-SAIFATRFHRPTSTSAMVKSSASLASNITSCT 650
           S   +P S + A    +       +KS      N+ + T
Sbjct: 649 STKKLPGSTMKAASALKEYPQQQSMKSGGEKQDNLVTIT 687


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 476 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTV--PSSN--IHICYGQVFCEPC 628
           C +C + +   +++    + +HS C KC  C+    PSS         Q+FC+ C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 23  KTVKTKYFFIFKHCCFRYYSNFIS 94
           K V+T+YFF +   C   Y NF++
Sbjct: 337 KNVQTEYFFCYVGICIGVYGNFVA 360


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 98  HTYPKKSSLIMDKGQEQVKKPF 163
           HTYP  SSLI D    +V+ PF
Sbjct: 8   HTYPAVSSLIADLKSRKVQGPF 29


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 416 DNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA 535
           D+P  +S  E+ EG+ + S+ S    +++++   E +KQA
Sbjct: 557 DSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQA 596


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 498 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCT 650
           ST I     ++ P   TVP  S    +    P STS+   SS+ L S  TSCT
Sbjct: 288 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCT 340



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 498 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCT 650
           ST I     ++ P   TVP  S    +    P STS+   SS+ L S  TSCT
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCT 394


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 401 NGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENN 511
           +G + D+  ASS+S AS G   RSV  R   +  E++
Sbjct: 517 DGADNDDSSASSESFASAGAHSRSVFPRRSNVSEESH 553


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 21  QKPSKRNIFSF-SNIAVFVTIQILFQYIP-TQKSQV*LWI 134
           Q PS R      SN+  F++IQ L +Y+P T   +V  WI
Sbjct: 113 QAPSDRTWSRMVSNLFAFISIQFLNRYLPNTTAVKVVSWI 152


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +2

Query: 278 KMFYGHVFCNGC-----FKQHVLDRFRGECPSVHTNWAQWTCGKF 397
           K  YG VF N       FK+HV++   G+C        QW+  ++
Sbjct: 100 KYHYGWVFLNNEEFSDEFKEHVIEAVSGKCEFGLVPQEQWSIPEY 144


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 275 VKMFYGHVFCNGCFKQHVLDRFR 343
           +K FYGHV  N  F    L R+R
Sbjct: 265 IKSFYGHVQANFFFFHETLLRYR 287


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 447 PLKGILNAASALDAFK*STRITKLK-LTSRPSIVTVPSAIFATRFHRPTSTSAMVKSSAS 623
           P+  +L+++S++     S   + +  ++S  S  ++PS   +      +STS+   +S S
Sbjct: 534 PMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLS 593

Query: 624 LASNITSCT 650
           ++S+ TS T
Sbjct: 594 ISSSSTSST 602


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 507 ITKLKLTSRPSIVTVPSAIFATRFHRPTSTSAMVKSSASLASNITSCTDI 656
           + K+    RP    +P      R    TST+   KSS    S  T+ T++
Sbjct: 255 VEKINYDIRPQRDQIPEENIVPRISYLTSTTTSTKSSPVPESTTTNTTEV 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,194
Number of Sequences: 5004
Number of extensions: 56993
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)