Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m13
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical pr... 38 0.006
L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein pr... 38 0.006
Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical pr... 36 0.019
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 35 0.059
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 35 0.059
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 34 0.078
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 34 0.078
Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical pr... 33 0.14
M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein ( C.ele... 33 0.14
Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical p... 33 0.18
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical p... 33 0.18
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 33 0.18
Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical p... 33 0.18
Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical pr... 33 0.18
U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 33 0.18
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 33 0.24
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 31 0.55
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 31 0.55
AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein. 31 0.72
AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical ... 31 0.72
AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear recep... 31 0.72
AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear recep... 31 0.72
AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear recep... 31 0.72
Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical pr... 29 2.2
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 29 2.2
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 29 2.2
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 29 2.2
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 2.2
AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine r... 29 2.9
AF016683-8|AAM97998.1| 480|Caenorhabditis elegans Hypothetical ... 29 2.9
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 6.8
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 28 6.8
AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein. 28 6.8
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 28 6.8
AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical ... 28 6.8
AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical ... 28 6.8
AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical ... 28 6.8
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 28 6.8
>Z81054-4|CAB02885.3| 321|Caenorhabditis elegans Hypothetical
protein F01D4.6a protein.
Length = 321
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 476 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 652
C+ C + I + +D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 29 CNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 88
>L02877-1|AAA50614.1| 321|Caenorhabditis elegans homeoprotein
protein.
Length = 321
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 476 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 652
C+ C + I + +D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 29 CNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 88
>Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical
protein F07C6.1 protein.
Length = 329
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 476 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPCF 631
C++C Q ++ ++ + + +H++ KC C V S+ +FC CF
Sbjct: 143 CNKCKQHVDNSDLLTYQENPYHAYHFKCTTCKKVLESDARTIKDDLFCPRCF 194
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 467 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPC 628
R VC +C MI++ I+ +FH + KC C+ ++ G+++C C
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNELTTASREVNGELYCLRC 196
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 467 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPC 628
R VC +C MI++ I+ +FH + KC C+ ++ G+++C C
Sbjct: 143 RYVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNELTTASREVNGELYCLRC 196
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 434 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQV 613
S A N + ++CS C + I + +++ + +HS C +C C + + +
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSM 93
Query: 614 FCEPCF 631
+C F
Sbjct: 94 YCRAHF 99
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +2
Query: 434 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICYGQV 613
S A N + ++CS C + I + +++ + +HS C +C C + + +
Sbjct: 34 SNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKDELGATCFLREDSM 93
Query: 614 FCEPCF 631
+C F
Sbjct: 94 YCRAHF 99
>Z81054-5|CAE17755.1| 313|Caenorhabditis elegans Hypothetical
protein F01D4.6b protein.
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 518 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 652
++D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 35 QMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 80
>M20244-1|AAA28108.1| 313|Caenorhabditis elegans protein (
C.elegans mec-3 geneencoding differentiation of the six
touch receptor neurons,complete cds. ).
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 518 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFC-EPCFQHHVLHR 652
++D +++H +C KC C + + G+++C + ++ H +HR
Sbjct: 35 QMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHYYKDHSIHR 80
>Z54237-10|CAJ43909.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 556 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 615
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 616 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 674
Query: 602 YGQVFC 619
GQ FC
Sbjct: 675 NGQPFC 680
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 556 GQKFCESCFEQHIAPR 571
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical protein
T11B7.4d protein.
Length = 1424
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 1296 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 1355
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 1356 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 1414
Query: 602 YGQVFC 619
GQ FC
Sbjct: 1415 NGQPFC 1420
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 1296 GQKFCESCFEQHIAPR 1311
>Z54237-8|CAE52902.1| 771|Caenorhabditis elegans Hypothetical protein
T11B7.4c protein.
Length = 771
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 643 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 702
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 703 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 761
Query: 602 YGQVFC 619
GQ FC
Sbjct: 762 NGQPFC 767
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 643 GQKFCESCFEQHIAPR 658
>Z54237-7|CAB54312.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 517 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 576
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 577 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 635
Query: 602 YGQVFC 619
GQ FC
Sbjct: 636 NGQPFC 641
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 517 GQKFCESCFEQHIAPR 532
>Z54235-13|CAJ43902.1| 684|Caenorhabditis elegans Hypothetical
protein T11B7.4e protein.
Length = 684
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 556 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 615
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 616 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 674
Query: 602 YGQVFC 619
GQ FC
Sbjct: 675 NGQPFC 680
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 556 GQKFCESCFEQHIAPR 571
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 1296 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 1355
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 1356 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 1414
Query: 602 YGQVFC 619
GQ FC
Sbjct: 1415 NGQPFC 1420
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 1296 GQKFCESCFEQHIAPR 1311
>Z54235-10|CAE52905.1| 771|Caenorhabditis elegans Hypothetical
protein T11B7.4c protein.
Length = 771
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 643 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 702
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 703 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 761
Query: 602 YGQVFC 619
GQ FC
Sbjct: 762 NGQPFC 767
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 643 GQKFCESCFEQHIAPR 658
>Z54235-9|CAB54190.2| 645|Caenorhabditis elegans Hypothetical
protein T11B7.4b protein.
Length = 645
Score = 33.1 bits (72), Expect = 0.18
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Frame = +2
Query: 290 GHVFCNGCFKQHVLDRFR-------GEC-PSVHTNWAQ--WTCGK----FGNGQEGDNPG 427
G FC CF+QH+ R +C ++ W +TC FGN G
Sbjct: 517 GQKFCESCFEQHIAPRCNKCSKPIISDCLNALQKKWHPTCFTCAHCQKPFGNSAFYLEQG 576
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNK-IEIDKQAFHSHCAKCYFC-HTVPSSNIHIC 601
E + C C I ++ +E AFHS+C C C H + +
Sbjct: 577 LPY-CEQDWNALFTTKCVSCRYPIEAGDRWVEALGNAFHSNCFTCARCNHNLEGESFFAK 635
Query: 602 YGQVFC 619
GQ FC
Sbjct: 636 NGQPFC 641
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 GQVFCEPCFQHHVLHR 652
GQ FCE CF+ H+ R
Sbjct: 517 GQKFCESCFEQHIAPR 532
>U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family
protein 6 protein.
Length = 287
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 440 SEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSSNIHICY---GQ 610
S + T+ +CS C +I + + + ++H C +C C + S+ C+ G
Sbjct: 7 SATTSSTTEDKLCSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQ-LSLSSFKKCFSRHGN 65
Query: 611 VFCEPCFQHHVLH 649
++CE H +L+
Sbjct: 66 IYCE--HDHQMLY 76
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 32.7 bits (71), Expect = 0.24
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Frame = +2
Query: 302 CNGCFKQHVLDRFRGECPSVHTNWAQ-----WTCGKFGNGQEGDNPGASSKSEASEGNTK 466
CNGC Q + F ++ T+W CG NG + E ++
Sbjct: 137 CNGC-SQPITSNF---ITALGTHWHPDCFVCQHCGVSFNGASFFEHNGAPLCERHYHESR 192
Query: 467 RSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFC-HTVPSSNIHICYGQVFCEPCFQH 637
S+CS+C IN + ++ FH +C +C H + + FC C+ +
Sbjct: 193 GSICSQCRGAINGRCVAAMGRK-FHPEHFRCSYCNHQLTKGTFKEVDRRPFCHKCYNN 249
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 458 NTKRSVCSRCLQMINENNKIEI--DKQAFHSHCAKCYFCHT 574
N+K+ C+RC + + +K+ D FH C KCY C T
Sbjct: 2 NSKQH-CNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGT 41
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 458 NTKRSVCSRCLQMINENNKIEI--DKQAFHSHCAKCYFCHT 574
N+K+ C+RC + + +K+ D FH C KCY C T
Sbjct: 2 NSKQH-CNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGT 41
>AY349017-1|AAQ55497.1| 474|Caenorhabditis elegans NHR-91A protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 386 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 565
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
>AL132841-4|CAB60329.2| 474|Caenorhabditis elegans Hypothetical
protein Y15E3A.1a protein.
Length = 474
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 386 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 565
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 100 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 157
>AF273835-1|AAG15183.1| 476|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 476
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 386 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 565
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 102 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 159
>AF273834-1|AAG15182.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 386 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 565
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
>AF273833-1|AAG15181.1| 475|Caenorhabditis elegans nuclear receptor
NHR-91 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.72
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 386 CGKFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYF 565
C G+ G + GA++ E +G KRSV ++ + +++N EIDKQ + C C F
Sbjct: 101 CSVCGDKSTGLHYGAAT-CEGCKGFFKRSVQNKKVYHCSQDNCCEIDKQN-RNRCQSCRF 158
>Z71261-2|CAA95805.1| 813|Caenorhabditis elegans Hypothetical
protein F21C3.2 protein.
Length = 813
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 605 HSRCGCWTME-PCGKNSTWHSDYGRPACQ 522
H+ C W+ C KN W S+ R +CQ
Sbjct: 640 HTNCAMWSRSGECNKNPLWMSENCRSSCQ 668
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform b protein.
Length = 868
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 586
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 784 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 843
Query: 587 NIHICYGQVFCEPCFQH 637
++ + G++ C+ C+ +
Sbjct: 844 DVRVRDGRLHCQTCYSN 860
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform a protein.
Length = 1004
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 586
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 920 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 979
Query: 587 NIHICYGQVFCEPCFQH 637
++ + G++ C+ C+ +
Sbjct: 980 DVRVRDGRLHCQTCYSN 996
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 428 ASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA--FHSHCAKCYFCHT-----VPSS 586
+S K ++ + + C+ C + + + ++ +H C KCY C T +
Sbjct: 1015 SSQKDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGA 1074
Query: 587 NIHICYGQVFCEPCFQH 637
++ + G++ C+ C+ +
Sbjct: 1075 DVRVRDGRLHCQTCYSN 1091
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 498 STRITKLKLTSRPSIVTVPSAIFATRFHRPTSTS-AMVKSSASLASNITS 644
++ IT ++ PS TVPS +T +P+S S A ++ L SN+TS
Sbjct: 283 TSTITSTGSSNPPSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTS 332
>AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 16 protein.
Length = 279
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 34 NEIFFHFQTLLFSLLFKFYF 93
N I FHF +LF+ LFK +F
Sbjct: 218 NVIIFHFSPILFAFLFKHWF 237
>AF016683-8|AAM97998.1| 480|Caenorhabditis elegans Hypothetical
protein K09F6.10 protein.
Length = 480
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +2
Query: 539 HSHCAKCYFCHTVPS--SNIHICYGQVFCEPCFQ 634
+ C KC F H S +H C+ FC+ C Q
Sbjct: 400 YEKCKKCGFIHRKDSYSKTVHKCHDNAFCKICRQ 433
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 537 SIVTVPSAIFATRFHRPTSTSAMVKSSASLASNIT 641
S VP++I +T RPT+ S VKSS + S T
Sbjct: 453 STTHVPTSIRSTSSARPTTYSTTVKSSTTTVSTST 487
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 434 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA-FHSHCAKCYFCHTVPSSN--IHICY 604
S E + +VC+ C I++ + ++ FH+ C KC C N +
Sbjct: 42 SPVEQRQHQPPMAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKN 101
Query: 605 GQVFC 619
GQ +C
Sbjct: 102 GQTYC 106
>AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein.
Length = 741
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 4 SVFSTFKNRQNEIFFHFQTLL 66
SVFS FKNR EI FH T+L
Sbjct: 355 SVFSEFKNR--EIMFHVSTML 373
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 434 SKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA-FHSHCAKCYFCHTVPSSN--IHICY 604
S E + +VC+ C I++ + ++ FH+ C KC C N +
Sbjct: 42 SPVEQRQHQPPMAVCAGCRLEISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKN 101
Query: 605 GQVFC 619
GQ +C
Sbjct: 102 GQTYC 106
>AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical
protein F53A10.2c protein.
Length = 811
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 4 SVFSTFKNRQNEIFFHFQTLL 66
SVFS FKNR EI FH T+L
Sbjct: 425 SVFSEFKNR--EIMFHVSTML 443
>AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical
protein F53A10.2a protein.
Length = 742
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 4 SVFSTFKNRQNEIFFHFQTLL 66
SVFS FKNR EI FH T+L
Sbjct: 356 SVFSEFKNR--EIMFHVSTML 374
>AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical
protein Y51F10.2 protein.
Length = 305
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 470 SVCSRCLQMINENNKIE-----IDKQAFHSHCAKCYFCHTVPSSNIHICY 604
+VC RC+ +++E ++I ID+ H C C P + I Y
Sbjct: 41 TVCERCIGLLDEQSRINHNRPPIDRSFVHIRCPVCRAVTQTPRNYIRSNY 90
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 284 FYGHVFCNGCFKQHVLDRFRGECPSVHTNWAQWTCGKFGNGQE 412
F G FC C+K + ++HT + + C K N QE
Sbjct: 83 FLGPTFCATCYKAYATSVLTVNLINLHTLYYRTVCLKLINAQE 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,135
Number of Sequences: 27780
Number of extensions: 334325
Number of successful extensions: 1094
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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