Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m12
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    26   7.5  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    26   7.5  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  EQLARCNLGLSAGTKLVHETDSLARE 134
           E+LA CNLGL AG  +++  D +  E
Sbjct: 80  EELAACNLGLPAGNSILNVDDDVRLE 105


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  EQLARCNLGLSAGTKLVHETDSLARE 134
           E+LA CNLGL AG  +++  D +  E
Sbjct: 132 EELAACNLGLPAGNSILNVDDDVRLE 157


>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
           twisted, animalsroll when moving protein 3, isoform c
           protein.
          Length = 1310

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31  LKFNVNTELNNWLDVTLACQPAPNWYMRRTAW-RESPP 141
           L  N NTE N  L V+        W M   AW R S P
Sbjct: 118 LDMNKNTEANLALTVSCLASQTVTWMMTEFAWNRASSP 155


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31   LKFNVNTELNNWLDVTLACQPAPNWYMRRTAW-RESPP 141
            L  N NTE N  L V+        W M   AW R S P
Sbjct: 1264 LDMNKNTEANLALTVSCLASQTVTWMMTEFAWNRASSP 1301


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 138 RTLAPSCPSHVPVWCRLTSQGY-IEPVVQLRIHIKF 34
           R +A   P  V +WCR T+  Y I  ++   + + F
Sbjct: 187 RWIAVCRPLEVQIWCRYTTSSYSIAAIITFAVVLNF 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,260,082
Number of Sequences: 27780
Number of extensions: 133808
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)