Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m11
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    36   0.022
05_04_0066 + 17621532-17621619,17621658-17621820,17621864-176222...    32   0.36 
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    28   5.9  
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    27   7.7  

>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
 Frame = +3

Query: 219 EDVIRKPIEMLLRTLSRQHLENNVNRRKVAPQQDPIKF-TYKVHRPKNDTQFCRFITETI 395
           E +I +PIE    T S + +   ++ +      +PI+  + K+     DTQ  + I++ I
Sbjct: 352 EKIISEPIE----TQSEKIISEPIDAQSEKIISEPIEAQSEKIISEPIDTQTEKIISDPI 407

Query: 396 NSLKNDEIMKPVEAEVQKMLYGDLPNGGRSQYLIARKMKTPNEKYYSDQTTNQ 554
            +     I +P++A+ +K++    P   +S+ +I+  + T  EK  SD    Q
Sbjct: 408 EAQSEKIISEPIDAQTEKII--SEPIEAQSEKIISEPIDTQTEKIISDPIDTQ 458



 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +3

Query: 360 DTQFCRFITETINSLKNDEIMKPVEAEVQKMLYGDLPNGGRSQYLIARKMKTPNEKYYSD 539
           DTQ  + I+E I +     I +P++A+ +K++    P   +S+ +I+  + T  EK  SD
Sbjct: 348 DTQSEKIISEPIETQSEKIISEPIDAQSEKII--SEPIEAQSEKIISEPIDTQTEKIISD 405


>05_04_0066 +
           17621532-17621619,17621658-17621820,17621864-17622233,
           17622548-17623009
          Length = 360

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 15  RFYFTLNI*YHI*K*IVMPLDYSNPYIIKFLSENFEKETKSRVAW 149
           R+ F LN  Y +    ++P DYS P  IKF  E ++KE   R +W
Sbjct: 223 RYLFLLNNSYVVQYQFLVPSDYSPPSEIKFHYEQYQKE-YMRASW 266


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 340 LYVNFIGSC*GATFRRLTLFSKCCLERVLSNISIGFRITSS---KWYPL*FAENLSLLEI 170
           + V  +G C  A   R T+  + C E      S GF  + +   +W PL  +  +S+L++
Sbjct: 339 MIVELVGCCDRALASRSTIHRQFCFEPQHLRSSFGFSSSETLQYQWMPLIKSPVMSILDV 398

Query: 169 S 167
           S
Sbjct: 399 S 399


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 183 LKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRRK 302
           ++F  +   YHL+DVI   I  LL  +  +++E  V RR+
Sbjct: 178 IEFEYSKSKYHLKDVIIGKIYFLLVRIKIKNMELEVRRRE 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,977
Number of Sequences: 37544
Number of extensions: 217110
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)