Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m10
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   3.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   5.5  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   7.3  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 200 FILTSTRYGRGGDGELIHSDISCKFIVTIYIDIYTVEVGSGNERFNF 60
           F L + +Y      E+IH  +  K +V+     + +  G GN+   F
Sbjct: 602 FCLDTRKYSLKNIVEVIHPSVPVKLVVSTTEPAFQLYTGDGNDICEF 648


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 196 IN*DFF*MYIYLFIYLKSKETLSKVFYYCFYNITLFI 306
           +N D   +Y+   IYLKSKE +  V   CF   +L +
Sbjct: 835 LNSDPIAVYLKALIYLKSKEAVKAV--RCFKTTSLVL 869


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 155 LIHSDISCKFIVTIYIDIYTV 93
           L+H D +C+F+  ++I  ++V
Sbjct: 181 LLHRDFACRFLSGLFISRFSV 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,156,502
Number of Sequences: 5004
Number of extensions: 20159
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)