Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m10
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504...    30   0.40 
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    29   1.2  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    29   1.2  
04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606           26   6.6  

>06_01_0691 -
           5040280-5040801,5041439-5041529,5042368-5042568,
           5042649-5046148
          Length = 1437

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 57  IKVKSFIPRPYLYRVDVNINCHDKFTRNVTM 149
           +K   ++P  +LYR+ +++ CH+K  R+V +
Sbjct: 877 MKAAGYLPNMHLYRIMISLLCHNKRFRDVEL 907


>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 TRNVTMN*FSVSTSTIPCRC 191
           TRN+T N    S+S+ PCRC
Sbjct: 631 TRNMTRNELECSSSSTPCRC 650


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 TRNVTMN*FSVSTSTIPCRC 191
           TRN+T N    S+S+ PCRC
Sbjct: 597 TRNMTRNELECSSSSTPCRC 616


>04_01_0137 - 1549562-1550213,1553363-1553896,1554524-1554606
          Length = 422

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 289 YRNNNKILCLVFPLILNI*INKYTFK 212
           + NNNK L LV+ L+ N  +N Y +K
Sbjct: 169 WSNNNKELFLVYELMKNGNLNDYLYK 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,540,974
Number of Sequences: 37544
Number of extensions: 104424
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)