Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m10
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical p...    27   3.4  
AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p...    27   3.4  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    27   4.5  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z83234-6|CAB05770.2|  414|Caenorhabditis elegans Hypothetical
           protein K09E4.5 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 220 YIYLFIYLKSKETLSKVFYYCFYNITLFIINDY 318
           YI+ +  L+   TL   + Y  +N+TLFI+  Y
Sbjct: 193 YIFFYPALRPFYTLITTYLYIVFNMTLFILIHY 225


>Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical
           protein C48B4.11 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 128 FIVTIYIDIYTVEVGSGNERFNFNLAQDY 42
           F+ +IY + Y  E     E FNF + +D+
Sbjct: 80  FVTSIYYEFYPKETHEFLESFNFKIVKDF 108


>AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p450
           family protein 33C2 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 78  PRPYLYRVDVNINCHDKFTRNVTMN*FSVSTSTIPCRCQYKLRFFLNVYLFIHIFKI 248
           P P+ +  D  I+ H K  R   +  FSV   + P     ++  FL +  F++ +KI
Sbjct: 408 PDPHTFNPDRFIDEHGKLKRVEELAPFSVGKRSCPGEGLARMELFLFIANFLNRYKI 464


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 IYLFIYLKSKETLSKVFYYCFYNITLFIINDYIV 324
           IY+  +      L ++FY CFY     II+ Y +
Sbjct: 41  IYVIAFFNIISDLLQLFYLCFYFSLSIIIDQYAI 74


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 182 RYGRGGDGELIHSDISCKFIVTIYIDIYTVEVGSG 78
           +YGR   G+LI S+IS  F   I    +    G+G
Sbjct: 362 KYGRSAMGKLIISEISWPFPQVILFGCFMSTAGAG 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,248,276
Number of Sequences: 27780
Number of extensions: 109277
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)