Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m10
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.43 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    20   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 TSTIPCRCQYKLRFFLNVYLFIHIFKIKG 254
           ++T P   Q+  R FLN YLF+ +  + G
Sbjct: 389 SATFPDEVQHLARRFLNNYLFLAVGIVGG 417


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +3

Query: 162 VSTSTIPCRC 191
           + T T+PC+C
Sbjct: 36  IRTHTLPCKC 45


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 62  FNLAQDYDIYFK 27
           F  A+D+DI+FK
Sbjct: 115 FYHAKDFDIFFK 126


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 62  FNLAQDYDIYFK 27
           F  A+D+DI+FK
Sbjct: 115 FYHAKDFDIFFK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,865
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)