Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m07
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    72   6e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    29   0.42 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   6.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   9.0  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   9.0  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 29/165 (17%)
 Frame = +2

Query: 215 WSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDV 394
           W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+LY  +++V+   L+ +    +
Sbjct: 26  WEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLKEETVPAI 85

Query: 395 LHS-----LHNGFLQTLNN-----AWT------------------DHQTSMVMIRDILMY 490
             +     L N  L    N     +W+                  DH  SM MI  +L Y
Sbjct: 86  YKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISSVLKY 145

Query: 491 MDRVFVQQNEVDNVYNLGLIIFRDQVVRYGC-IXDHLRQTLLELV 622
           +D+V+ +  +   V   G+ IFR+ V+     I +   +T+L LV
Sbjct: 146 LDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGEKCVETILILV 190


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 574 TNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVE 428
           +  L SEDN+P I ++V  I   +N V     I++ DH    +S CI++
Sbjct: 34  SRKLASEDNKPSIQEVVRGI--PQNRVRNWAVIAHIDHGKSTLSDCILK 80


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 110 IKMIRKFKVW--NFSEPYYQMYPDTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEE 283
           + + R+F  W    S+       D+ +T+DE  +++  ++    ++++    NS +SF +
Sbjct: 286 LSLNRRFYAWLMGLSKDTELSISDSSITVDENTLQQNMAIFFEGVKDLLSSKNSLMSFYK 345

Query: 284 LYRNAYTM 307
            +R  Y +
Sbjct: 346 AFRILYAL 353


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 571 NNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVESL*ETIV 407
           N +   DN+P +   V F  + K + H++Q  S   H+ L+  P ++    +T++
Sbjct: 645 NTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHS-LITGPAVIVDTTQTLL 698


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 249 CISCMAFFNKLHIRSTYF 196
           C+ C A   +LHI++ YF
Sbjct: 274 CLMCAAALKQLHIKAVYF 291


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 416 NHCVMNAIHLL 384
           NHCVMNAI+L+
Sbjct: 210 NHCVMNAINLV 220


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 196 EVCGAYMELVKECHTRNTKEKQLWT 270
           E CGA    VK+C  R  K    WT
Sbjct: 114 ENCGAMSHKVKDCMERPRKRGARWT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,762
Number of Sequences: 5004
Number of extensions: 60441
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)