Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m07
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 188 4e-48
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 188 4e-48
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 29 3.6
Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical p... 28 4.8
Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding... 28 4.8
AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding... 28 4.8
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC024202-4|AAF36036.1| 406|Caenorhabditis elegans Hypothetical ... 28 6.3
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 28 6.3
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 28 6.3
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z67884-2|CAA91808.1| 429|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical ... 27 8.4
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 188 bits (457), Expect = 4e-48
Identities = 90/148 (60%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = +2
Query: 185 TMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQ 364
T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY GLK+V+
Sbjct: 21 TIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQD 80
Query: 365 HLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-QQNEVDNVYN 538
H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q N V VYN
Sbjct: 81 HM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYN 139
Query: 539 LGLIIFRDQVVRYGCIXDHLRQTLLELV 622
LGL +R +++R I D +R LLEL+
Sbjct: 140 LGLDAYRTEILRQNGIGDRIRDALLELI 167
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 188 bits (457), Expect = 4e-48
Identities = 90/148 (60%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
Frame = +2
Query: 185 TMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQ 364
T+DE+YV + W LLK AIQEIQ+KNNSGLSFEELYRNAYTMVLHKHGERLY GLK+V+
Sbjct: 21 TIDEQYVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQD 80
Query: 365 HLETKVREDVLHSLHNG-FLQTLNNAWTDHQTSMVMIRDILMYMDRVFV-QQNEVDNVYN 538
H+ VR ++ S+++G FL+T+ +W DH +MVMIRDILMYMDR++V Q N V VYN
Sbjct: 81 HM-ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYN 139
Query: 539 LGLIIFRDQVVRYGCIXDHLRQTLLELV 622
LGL +R +++R I D +R LLEL+
Sbjct: 140 LGLDAYRTEILRQNGIGDRIRDALLELI 167
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 281 ELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKV 382
E +++A+T++ +K G+ L T + TQHL+ ++
Sbjct: 380 EKFKSAFTLMANKQGKALVTFERNFRTQHLQVQM 413
>Z68014-1|CAA92023.1| 335|Caenorhabditis elegans Hypothetical
protein W04G3.1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 137 WNFSEPYYQMYPDTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLS 274
WN +P YQ W + E + R+ LKN QE+ ++N +G S
Sbjct: 249 WNSPKPIYQGPDCEWPSEKEVFARRV---LKN--QEMNERNKNGTS 289
>Z36238-10|CAL63999.1| 287|Caenorhabditis elegans Hypothetical
protein R74.3b protein.
Length = 287
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 568 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 431
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>Z36238-9|CAL63998.1| 335|Caenorhabditis elegans Hypothetical
protein R74.3a protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 568 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 431
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>AF443191-1|AAL60201.1| 285|Caenorhabditis elegans X-box binding
protein processedisoform protein.
Length = 285
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 568 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 431
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>AF443190-1|AAL60200.1| 287|Caenorhabditis elegans X-box binding
protein unprocessedisoform protein.
Length = 287
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 568 NLISEDNEPKI-VDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIV 431
NL+++ NE + ++ N L+N N I+QN+ Y + V+P +V
Sbjct: 116 NLMNQQNESVMYMEENNENLMNSNDACIYQNVVYEEEVVGEVAPVVV 162
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 405 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 268
N +T + C + LR V +L C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338
>AC024202-4|AAF36036.1| 406|Caenorhabditis elegans Hypothetical
protein Y71H2B.7 protein.
Length = 406
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 107 KIKMIRKFKVWNFSEPY-YQMYPDTWMTMDEKYVERIWSL--LKNAIQ 241
K ++R+ K +P YQMY D+W +D + + + L LKN ++
Sbjct: 45 KTTIVRQLKCLCIQKPQSYQMYDDSWNLIDREKIFDNYELENLKNVVR 92
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 293 YGKALQMIVQSCFSFVFLVWHSLTSSIYAPHTSHP*SSKCL 171
Y KA+ + + SC +FVF L Y P S+KCL
Sbjct: 330 YVKAIDVWMLSCMTFVFCSLLELAWVGYLSREEEPTSAKCL 370
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 405 NECNTSSRTLVSRC*VTTSLRPVYSLSPCLCSTIVYALR*SSSNDS 268
N +T + C + LR V +L C CS + Y+ R S SND+
Sbjct: 295 NRNDTDVPYTATHCEIDCKLRKVRNL--CGCSPLAYSARESGSNDT 338
>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
protein F23H12.6 protein.
Length = 1025
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 236 IQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDVL 397
+ ++ K NSG S + VL KH L ++E + + +E K + D+L
Sbjct: 770 VNKLMKNMNSGRSGSANLMDHVFSVLEKHASSLEDEVQERMKELVEEKKKSDIL 823
>Z67884-2|CAA91808.1| 429|Caenorhabditis elegans Hypothetical
protein T14G8.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 517 ILLNKNSVHIHQNISYHDHAGLMVSPC 437
+ +NK +H+H N+ YH A ++ C
Sbjct: 66 VRMNKVPLHLHNNVIYHQFALVLAQWC 92
>AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical
protein H04D03.4 protein.
Length = 688
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 173 DTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVL-HKH 322
D W + +++ E +W L++ I K L++E++ R A +++ HKH
Sbjct: 425 DNWPGLMKRHSEEMWQLIERLIDSKFCK----LNYEKIVRKAVRLLIRHKH 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,140
Number of Sequences: 27780
Number of extensions: 330863
Number of successful extensions: 995
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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