Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m07
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 293 YGKALQMIVQSCFSFVFLVWHSLTSSIYAPHTSHP*SSKCLDTFGSKALRSS 138
           Y KA+ + + SC  FVFL   SL       +   P ++K +  +  + LR +
Sbjct: 272 YVKAIDVWMSSCSVFVFL---SLMEFAVVNNYMGPVATKAMKGYSDEDLREA 320


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 293 YGKALQMIVQSCFSFVF 243
           Y KA+ + +  CF FVF
Sbjct: 300 YVKAIDIYLVMCFVFVF 316


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 486 CIWTEFLFNKMKLTMSTIL 542
           C+  ++   K+K+ +STIL
Sbjct: 488 CVGRKYAMLKLKIVLSTIL 506


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 224 LKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLY 337
           L+  I     KNN  L ++++    Y   + K   R+Y
Sbjct: 330 LREEINTFCPKNNKELKYDDIKEMEYLDKVFKETLRMY 367


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 568  NLISEDNEPKIVDIVNFILLNKNSVHIHQN 479
            N  ++ ++P I +   FI +  NS+ +H N
Sbjct: 1453 NTRTKGSKPIIPEAARFIEVATNSITLHLN 1482


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 237 YKKYKRKTTLDYHL 278
           Y+K KRK  L+Y L
Sbjct: 53  YEKLKRKMILEYEL 66


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 203 VERIWSLLKNAIQEIQKKNN 262
           VER+ + L+NA+Q +  +N+
Sbjct: 359 VERMHNKLRNALQTVLAQNH 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,145
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)