Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m03
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    32   0.32 
Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF003151-2|AAK18919.3|  277|Caenorhabditis elegans Prion-like-(q...    27   9.2  

>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 537 HGLWPDTEIGSVPCNVLVMRREFDDGL 457
           HGLWP+ E GS P N     R FD+ L
Sbjct: 60  HGLWPNFENGSYPQNCRGTPRHFDENL 86


>Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical
           protein ZK792.7 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +2

Query: 83  KPTSSRSCFSFCYNHMLLLCIAVYNFS*NFIWLLFDLPRHKHAAMCYLANPILPSYEVGY 262
           + +SSR  F +    ++L  + ++N S ++ WL    P H+    C     +     +GY
Sbjct: 2   RQSSSRRAFIYGIPALVLAFVILWNESWSYWWLSRQWPEHEENGRCDRILIVADPQLIGY 61

Query: 263 RIEYKESINR 292
           + E    I+R
Sbjct: 62  KNEKFGEISR 71


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 213 LCVTWLIQYSQAMKLATELSTKKVSTDVCGFSQ 311
           LC +  I YSQ M   TE + K+V  +V G  Q
Sbjct: 778 LCASLFIHYSQFMPRLTEAAKKRVCRNVWGVQQ 810


>Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 78  LLSQRRAGLASHFA--IIICYFCVLQSTTSHEISSGYYLICR-DTNTQL 215
           ++ +++A  A +    I+ C+FC+L S  +  ++ GY      D NT L
Sbjct: 124 VVHEKKAAAAKYMGDEIVFCFFCILMSAYASGMTLGYMKFSMIDLNTML 172


>Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 78  LLSQRRAGLASHFA--IIICYFCVLQSTTSHEISSGYYLICR-DTNTQL 215
           ++ +++A  A +    I+ C+FC+L S  +  ++ GY      D NT L
Sbjct: 124 VVHEKKAAAAKYMGDEIVFCFFCILMSAYASGMTLGYMKFSMIDLNTML 172


>U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical
           protein C25B8.4b protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 466 RRTLCISCMLFKLSRSLLYFTTKLFIGQRITGLLSSIGYTSTYDRFCPIG-FNW 308
           +  LC++  +++ S    Y T   F   ++  L++++G+ ST  RF  +  FNW
Sbjct: 14  KSVLCLTVTIYQSSFEKFYVTKSYFRIFKLVLLVAAVGFVST--RFAQVKLFNW 65


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 617 KWVKHKVQSMYDPTCD 664
           KW  H VQ++Y PTC+
Sbjct: 406 KWNTHTVQNLYSPTCN 421


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 360 DESKPVMRCPIKSLVVKYNKDLLN-LKSIHEIHRVRRQIPYALRGRYRGQTQSQYLAIDH 536
           D    +M   +    V Y  DLL  LKS HE+  VR  IP     R    T+  +   D 
Sbjct: 318 DRFDDLMHFEVDESHVLYKADLLEYLKSAHELREVRVVIPSTFYSRVSRCTEGCFSNPDF 377

Query: 537 GNGKDDG 557
              + DG
Sbjct: 378 ACFRADG 384


>AF003151-2|AAK18919.3|  277|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 24
           protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 605 WNERKWVKHKVQSMYDPTCDD 667
           WN+ KW   +V+ M+  + DD
Sbjct: 189 WNKNKWTNKQVEDMFKKSIDD 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,411
Number of Sequences: 27780
Number of extensions: 334946
Number of successful extensions: 984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)