Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17m01
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...   136   3e-33
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   1.7  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    27   2.2  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    26   3.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   6.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.8  

>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score =  136 bits (328), Expect = 3e-33
 Identities = 59/114 (51%), Positives = 78/114 (68%)
 Frame = +3

Query: 231 YLSPEVAHRIGVAAIKHGLFPPDQNEDPKILKTRLLDYDLSNPLGIAAGFDKHGDAVVGL 410
           + +PE +HR+ + A   G+ P D+  D   L   +      NP+G+AAGFDK  DA+ GL
Sbjct: 75  FTTPEFSHRVAILAASWGITPKDRVADDPSLAVEVWGKKFCNPIGLAAGFDKQADAISGL 134

Query: 411 MKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFNSIGHDEVYKKLE 572
           +  GFS +E+GSVTP+PQPGNPKPR FRL  D +VINRYGFNSIGHD +  K++
Sbjct: 135 LNFGFSYLEIGSVTPKPQPGNPKPRYFRLKPDLSVINRYGFNSIGHDAILAKIQ 188


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 183 KDFNSYYENVLQPLSQYLSPEVAHRIG-VAAIKHGLFPPDQNEDPKILKT 329
           KD N YY+N  + L Q       HR   V +++  L PP +  +   LK+
Sbjct: 341 KDNNDYYDNAARILKQMFHVAERHRRNRVPSVQEVLNPPPRESEAWRLKS 390


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 309 DPKILKTRLLDYDLSNPLGIAAGFDKHGDAVVGLMKLGFSIIEVGSVTPQPQPGNP 476
           D  I K R + Y++    GI     K  DAV  + K+GF+++E   +T    P  P
Sbjct: 237 DSSIPKHREIAYNIEVGDGIPQMVRKC-DAVEAIKKVGFNLLEEDDLTDHDNPDLP 291


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 587 GLLDSFQLFVYFVVPYAVEAISVDD 513
           G+L SF  F   ++ Y +E I VDD
Sbjct: 36  GILRSFDQFANLMLQYTIERIYVDD 60


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 607 RSARFITAFSIPSSFLYTSSCPMLLKPYLLMTAPSSGSRKTLGLG 473
           +S+R+ T  S+PSS  Y  +CP  L+     T+ +  SR+  GLG
Sbjct: 155 QSSRY-TLPSLPSSPSY--NCPTTLRKIHTNTSSNGTSRRVSGLG 196


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 378 FDKHGDAVVGLMKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRY 527
           FD + D +      G  +++VG +TP   P N K     + E+GA I  +
Sbjct: 835 FDNNKDIIFYCAARGH-MVDVGGITPGSMPSNSK----AIYEEGAAIKTF 879


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 186 DFNSYYENVLQPLSQYLSPEVAHRIGVAAIKHGLFPPDQNE 308
           DFN    N +Q     L P++   + + ++ H  +   +NE
Sbjct: 244 DFNMLCSNSVQSAHTNLQPDITSFVAILSLSHEAYHCTENE 284


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 439 TSMIEKPSFIRPTTASPCLSNPAAMPSGLLRS 344
           TSMI   S    TT SP  +  + +PS ++ S
Sbjct: 205 TSMIPSSSSFTTTTGSPYYNTSSFLPSSVISS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,317
Number of Sequences: 5004
Number of extensions: 45673
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)