Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17m01
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1577 + 34554819-34554995,34555672-34555754,34555906-345562... 134 7e-32
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 31 0.74
01_06_1835 + 40223645-40224148,40224893-40225189,40225344-402254... 31 0.97
02_01_0302 - 2021221-2023305 30 1.7
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079... 29 3.0
09_02_0598 + 11087225-11087455 28 6.9
04_01_0615 - 8060085-8060972 28 6.9
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 28 6.9
05_04_0049 + 17497255-17497908 27 9.1
>04_04_1577 +
34554819-34554995,34555672-34555754,34555906-34556229,
34556347-34556602,34556951-34557031,34557106-34557213,
34557300-34557329,34557475-34557612,34557737-34557774,
34557858-34557957,34558194-34558268
Length = 469
Score = 134 bits (323), Expect = 7e-32
Identities = 63/120 (52%), Positives = 80/120 (66%)
Frame = +3
Query: 210 VLQPLSQYLSPEVAHRIGVAAIKHGLFPPDQNEDPKILKTRLLDYDLSNPLGIAAGFDKH 389
++ PL L E AHR+ V A HG P ++ DP +L + +NP+G+AAGFDK+
Sbjct: 96 LVNPLFALLDAEFAHRLAVTAASHGFVPREKRPDPSVLGLEIWGRKFTNPIGLAAGFDKN 155
Query: 390 GDAVVGLMKLGFSIIEVGSVTPQPQPGNPKPRVFRLPEDGAVINRYGFNSIGHDEVYKKL 569
+AV GL+ +GF +EVGSVTP PQ GNPKPR+FRL E GAVINR GFNS G V K+L
Sbjct: 156 AEAVEGLLGMGFGFVEVGSVTPLPQEGNPKPRIFRLREHGAVINRCGFNSEGIVVVAKRL 215
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -3
Query: 404 HDRVSVLVEPGGYAKWIA*VV 342
+DRV ++PGGYA+W++ +V
Sbjct: 126 YDRVKEKIDPGGYAEWVSSIV 146
>01_06_1835 +
40223645-40224148,40224893-40225189,40225344-40225439,
40225595-40225748,40225773-40226011
Length = 429
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 592 ITAFSIPSSFLYTSSCPMLLKPYLLMTAPSSGSR 491
+ F++P++FLY +S P P LL+ G+R
Sbjct: 18 LLVFAVPTTFLYLTSAPAASSPSLLLNLKPFGAR 51
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 514 TAPSSGSRKTLGLGF--PGCGCGVTEPTSMIEKPSFIRPTTASPCLSNPAAMPS 359
T PSSGS + G+ P G + PT + P PTT P S+P+ PS
Sbjct: 578 TPPSSGSPPSPSSGYQPPSGQPGASPPTQHV--PGAGTPTTTPPSHSHPSTPPS 629
>02_05_0449 -
29107310-29107377,29107732-29107777,29107860-29107934,
29108053-29108122,29108313-29108408,29108728-29108914,
29109001-29109169,29109614-29109646,29109731-29109841,
29110070-29111256,29112380-29112448,29114417-29114975,
29115455-29115589,29115714-29115896
Length = 995
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 521 QIW-LQQHRARRSIQKAGRNREGRNESGTPRRESG 622
Q+W L++H S + +G NR RN+S T + +SG
Sbjct: 303 QLWMLEEHYTALSERSSGHNRHSRNDSST-KHKSG 336
>09_02_0598 + 11087225-11087455
Length = 76
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 509 SRHQQIWLQQHRARRSIQKAGRNREGRNESGTP 607
S H+QIW + +K R REG N++G P
Sbjct: 41 SIHRQIWANVAEGKAGEEKE-RGREGMNDAGPP 72
>04_01_0615 - 8060085-8060972
Length = 295
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 366 IAAGFDKHGDAVVGLMKLGF----SIIEVGSVTPQPQPGNPKPRV 488
IAAG DK + V+ L + GF + +E TP P P PK V
Sbjct: 24 IAAGHDKVTELVLAL-RAGFEAKRAAVETTPTTPSPMPTLPKAEV 67
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -1
Query: 550 SCPMLLKPYLLMTAPSSGSRKTLGLGFPGCGCGVTEPTSMIEKPSFIRP---TTASPCLS 380
S P LL+P+L + P+S +G G G G T P M E + T +P +
Sbjct: 406 SPPPLLQPHLSLPMPNSSLELAIG-GIGGLGSLGTLPGCMNEFAGGVSSPMGTVITPARA 464
Query: 379 NPAAMPS 359
AA+PS
Sbjct: 465 TGAAIPS 471
>05_04_0049 + 17497255-17497908
Length = 217
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 545 ARRSIQKAGRNREGRNESGTPRRESG 622
ARR GRN R E TP RE+G
Sbjct: 55 ARRRATAVGRNPRRRRERETPTRETG 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,496
Number of Sequences: 37544
Number of extensions: 308469
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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