Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17l22
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 41 7e-05
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 28 0.71
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.6
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 3.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 3.8
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa... 25 5.0
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 5.0
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 6.7
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 6.7
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 6.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 6.7
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 24 8.8
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 24 8.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 24 8.8
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 8.8
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 41.1 bits (92), Expect = 7e-05
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 121 GGSIDWVKEDLNVPLVYCYESRDRGQYGFLLPPEQILPNSQETMDSVL 264
G +IDWV +V + RD G YG+LLP +QI+P ++E +L
Sbjct: 439 GTAIDWVYFAADVAWPFNIRLRDMGDYGYLLPAKQIVPTAKEFFAMIL 486
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 0.71
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1
Query: 359 LANATIITQSSGDSILPLLFKYPNLLP*WINSSTE 255
L +A I S+ +S+ PLLF YPN L N+S+E
Sbjct: 382 LDDANSIEGSNMNSLSPLLFDYPNSLYPVNNTSSE 416
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 223 QILPNSQETMDSVLELIHQGRRFGYLNNSGRILSPLL 333
QI + TM+ ++ELI +G + G +++ + + LL
Sbjct: 965 QISQKTDSTMEELVELIERGEKIGLTSDNENMATALL 1001
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 316 ILSPLLWVMIVALAKLLWVYKF 381
+L LL ++I AL L+W+YK+
Sbjct: 58 MLGLLLLLLIPALFTLIWIYKY 79
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 235 NSQETMDSVLELIHQGRRFGYLNNSGRILSPLLWVMIVALAKLL 366
+S + ++SVL + + FGYL G++LS ++ L+ LL
Sbjct: 297 DSFDEINSVLWMYSKKPTFGYLKQPGKVLSANQVDLVPTLSLLL 340
>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 5.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 85 TGNIAEAIYLATGGSIDWVKEDLNVPLVYCYESRDRGQYGFLLPPEQI---LPNSQETMD 255
TG++A + Y G I + E N+ YC E+R Q L E + +P + T
Sbjct: 159 TGSLATSGYGTALGIIRSLHESGNLEHAYCTETRPYNQGSRLTAFELVHDKIPATLVTDS 218
Query: 256 SVLELIHQ 279
+V ++H+
Sbjct: 219 TVASIMHK 226
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 261 TGINPSGQKIWVLKQQRKNTVSATLGDDRSIGQIAM 368
+ INP + ++V+K +KN T G +R + ++++
Sbjct: 307 SSINPPTETVYVVKMLKKNAAKFT-GKERHLQEVSI 341
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 163 LVYCYESRDRGQYGFLLPPE 222
+V+C S D+ F+LPPE
Sbjct: 354 MVFCASSPDKSVVEFVLPPE 373
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -1
Query: 386 NQNLYTHSNLANATIITQSSGDSILPLLFKYPNLLP*WINSSTESIVS 243
++ L +S+ N ++ + DS LP+L + W+N+ +SI++
Sbjct: 388 DRKLRIYSDSFNESVAIVDTTDSSLPVLLAFGAADNNWLNNVVDSILT 435
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 395 KNLNQNLYTHSNLANATIITQSSGDSILPLLFKY 294
KN++QN+ +S + N + SS PL F Y
Sbjct: 147 KNIHQNIARNSTVPNPVQESNSSSSQPDPLSFPY 180
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 138 PINATSSSEVDRLSYIPGPVESSKSDRQSSHGASSDVYLQ 19
P A E + Y+PGPV+ S DVYL+
Sbjct: 348 PNEAGRGDERRVIPYMPGPVDDVNELISSQRAMDLDVYLK 387
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 386 NQNLYTHSNLANATIITQSSGDSILPLLFKYPNLL 282
N ++ H+ LA + +++ DS+ +L Y N L
Sbjct: 735 NSSIIRHALLAKLVLFPENTADSLNEVLAAYKNTL 769
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 81 VESSKSDRQSSHGASSDVYLQ 19
+ES+ RQ+ HGASS + ++
Sbjct: 111 IESTNYQRQTIHGASSSLVIE 131
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 141 NPINATSSSEVDRLSYIPGPVESSKSDRQSSHGASSD 31
N +NA + DRL I + S++ D S +G+ D
Sbjct: 773 NQVNARLTEVQDRLKDITDKLASAREDAMSLYGSVVD 809
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 100 QLYSRSCREFQI*QTKLPWRVFR--CLSAINN 11
QL S S +F++ + +LP +FR + A+NN
Sbjct: 615 QLESESAEKFKVFRNQLPATMFRETIIDAVNN 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,978
Number of Sequences: 5004
Number of extensions: 37743
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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