Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17l22
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 34 0.044
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412... 30 0.71
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 28 2.9
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 28 3.8
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212... 28 3.8
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 27 5.0
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 27 5.0
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 27 5.0
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 27 5.0
06_01_0462 - 3285667-3288123 27 6.6
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 27 6.6
10_06_0120 - 10979458-10979665,10979909-10980585,10981315-109815... 27 8.7
05_03_0431 - 13969191-13969202,13969433-13969502,13969600-139699... 27 8.7
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 34.3 bits (75), Expect = 0.044
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = +1
Query: 58 SVRFGTLYRTGNIAE--AIYLATGGSIDWVKEDLNV----PLVYCYESRDRGQYGFLLPP 219
++RF G IAE + TG S+ +KE++ YC ++ G+YG L+P
Sbjct: 170 TIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEITSRAGEATQYCVQA---GRYGRLIPL 226
Query: 220 EQILPNSQETMDSVLELIHQGRRFGYLNNSGR 315
LP++ ET+D ++ + G +++NS R
Sbjct: 227 THELPHNTETIDIIIMM--TGTTDPHMDNSPR 256
>05_01_0494 -
4120996-4121011,4121152-4121483,4122560-4122706,
4122818-4122871,4123203-4123367,4125516-4125827,
4125992-4126078,4126202-4126411
Length = 440
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 283 CPDGLIPVQNPLFLDYWAESALVAAGNRIGL 191
CP+G IPV+ D S+ AAG R G+
Sbjct: 151 CPEGTIPVRRTTEADLLRASSAAAAGGRFGM 181
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 40 RAMGALSVRFGTLYRTGNIAEAIYL-ATGGSIDWVKEDLNVPLVYCYE 180
R +G + FG LY + ++ Y AT DWV +LN P CY+
Sbjct: 375 RKVGPVLTAFGMLYAETYLNKSKYREATLAGYDWVMRNLNFP-QDCYD 421
>08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 316 FFRCCLSTQIFCPDGLIPVQNPLFLDYWAESALVAAGNRIGLYRETRNSTRVERLS 149
FF CC + +I P+ + N L ++ + G+YRETRN TR ER S
Sbjct: 902 FFPCC-TNEIPLPNAGYHLYNCRELTIPLQT--IEESRAGGIYRETRNMTRNERES 954
>06_03_0033 +
15719864-15720049,15720139-15720601,15720638-15721254,
15721300-15721869,15723625-15724140
Length = 783
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 238 YWAESALVAAGNRIGLYRETRNSTRVER--LSPL*PNQCY 125
YW ++ V G YRETRN TR ER S L P Q Y
Sbjct: 608 YW-KTPTVGESRVGGTYRETRNITRNERESSSSLTPVQMY 646
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 205 FLLPPEQILPNSQETMDSVLELIHQGRRFGYLNNSG 312
F+ P + + P ++ L IH G R GY N SG
Sbjct: 296 FVEPLKWMTPVEDGALEGKLSCIHCGARLGYFNWSG 331
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 205 FLLPPEQILPNSQETMDSVLELIHQGRRFGYLNNSG 312
F+ P + + P ++ L IH G R GY N SG
Sbjct: 296 FVEPLKWMTPVEDGALEGKLSCIHCGARLGYFNWSG 331
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 305 LFKYPNLLP*WINSSTESIV 246
L K N+L WINS+TES+V
Sbjct: 725 LLKSSNVLDHWINSATESLV 744
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 301 LSTQIFCPDGLIPVQNPLFLDYWAESALVAAGNRIGLYRETRNSTRVER--LSPL*PNQC 128
++ +F L P++ + +A + + G+ G YRETRN TR ER S L P Q
Sbjct: 541 IAMTLFPRSDLRPIRGDELIIMFAMTIEESRGS--GTYRETRNMTRNERESSSSLTPVQM 598
Query: 127 Y 125
Y
Sbjct: 599 Y 599
>06_01_0462 - 3285667-3288123
Length = 818
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 213 ATRADSAQ*SRNNGFCTGINPSGQKIW 293
ATRAD A+ NNG ++P GQ +W
Sbjct: 131 ATRADRAE-LLNNGNLVVMDPEGQHLW 156
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 88 GNIAEAIYLATGGSIDWVKEDLNVPLVYCYESRDRGQYGFLLPPEQILPNS 240
G+ + LA GG DW+ E Y+S+ G G + E+ LPNS
Sbjct: 1129 GSSSHEKLLAIGGRYDWLIEQA---WDRTYKSKPPGAVGVSIALEKFLPNS 1176
>10_06_0120 -
10979458-10979665,10979909-10980585,10981315-10981538,
10981763-10982136,10982203-10982786
Length = 688
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 196 GLYRETRNSTRVERLS 149
G YRETRN TR ER S
Sbjct: 638 GAYRETRNMTRNERKS 653
>05_03_0431 -
13969191-13969202,13969433-13969502,13969600-13969991,
13970669-13970968
Length = 257
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 235 WAESALVAAGNRI-GLYRETRNSTRVERLS 149
W A+ +R G YRETRN TR ER S
Sbjct: 95 WQRFAVSIEESRASGAYRETRNMTRNERES 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,151
Number of Sequences: 37544
Number of extensions: 240949
Number of successful extensions: 661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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