Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l22
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 281 P*WINSSTESIVS*LLGRI 225
           P WI+S TES++   +G++
Sbjct: 338 PTWISSVTESVLKSKIGQV 356


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 331 VAETVFFRCCLSTQIFCP 278
           V E  F   CL  +I CP
Sbjct: 427 VREIAFSESCLPEEILCP 444


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 IDWVKEDLNVPLVYCYESRDRGQYGFLLPPEQILPNSQETMDSV 261
           + W++E    P  Y Y S        LLP  ++L +S E  D +
Sbjct: 165 VSWLQE----PSFYIYPSLQGDGKFHLLPTGELLVHSLEFSDQI 204


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 IDWVKEDLNVPLVYCYESRDRGQYGFLLPPEQILPNSQETMDSV 261
           + W++E    P  Y Y S        LLP  ++L +S E  D +
Sbjct: 165 VSWLQE----PSFYIYPSLQGDGKFHLLPTGELLVHSLEFSDQI 204


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 401 DAKNLNQNLYTHSNLANATIITQSSGDSILPLLFKYPNLL 282
           D+   +  LYT   L     I Q +GDS+   L+   +LL
Sbjct: 344 DSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLL 383


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 401 DAKNLNQNLYTHSNLANATIITQSSGDSILPLLFKYPNLL 282
           D+   +  LYT   L     I Q +GDS+   L+   +LL
Sbjct: 344 DSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,185
Number of Sequences: 438
Number of extensions: 2532
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)